Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02774 | Sorghum | cytosol | 95.33 | 97.72 |
| Os01t0279200-02 | Rice | plasma membrane | 93.56 | 95.9 |
| HORVU3Hr1G039980.8 | Barley | nucleus | 92.89 | 95.22 |
| TraesCS3D01G194400.1 | Wheat | nucleus | 92.89 | 95.22 |
| TraesCS3A01G191800.1 | Wheat | golgi, unclear | 92.89 | 95.22 |
| TraesCS3B01G219800.1 | Wheat | cytosol | 92.67 | 94.99 |
| Zm00001d008233_P001 | Maize | cytosol, nucleus, peroxisome | 95.33 | 92.46 |
| KRH64921 | Soybean | nucleus | 88.44 | 90.66 |
| VIT_08s0040g00430.t01 | Wine grape | cytosol | 88.44 | 90.45 |
| Solyc11g062430.1.1 | Tomato | cytosol | 87.78 | 89.98 |
| PGSC0003DMT400082384 | Potato | cytosol | 87.33 | 89.52 |
| Solyc01g008840.2.1 | Tomato | cytosol | 86.67 | 88.84 |
| KRH57710 | Soybean | nucleus | 86.22 | 88.38 |
| KRG94272 | Soybean | nucleus | 85.78 | 87.93 |
| KRG94968 | Soybean | cytosol | 87.56 | 87.56 |
| PGSC0003DMT400072227 | Potato | nucleus | 84.89 | 87.02 |
| Solyc10g081150.1.1 | Tomato | nucleus | 84.67 | 86.79 |
| CDY38538 | Canola | cytosol | 81.56 | 83.6 |
| Bra000529.1-P | Field mustard | cytosol | 81.11 | 83.14 |
| CDX83249 | Canola | cytosol | 80.89 | 83.11 |
| CDX71478 | Canola | cytosol | 80.44 | 82.46 |
| CDY04472 | Canola | cytosol | 80.0 | 82.0 |
| AT2G26990.1 | Thale cress | cytosol | 80.0 | 82.0 |
| PGSC0003DMT400058484 | Potato | cytosol | 86.44 | 81.38 |
| GSMUA_Achr6P08520_001 | Banana | cytosol | 34.44 | 81.15 |
| Bra012038.1-P | Field mustard | nucleus | 79.33 | 41.8 |
| Zm00001d041456_P001 | Maize | extracellular | 19.33 | 20.42 |
| Zm00001d003566_P001 | Maize | plasma membrane | 19.33 | 20.14 |
| Zm00001d003567_P001 | Maize | cytosol, nucleus, plastid | 19.11 | 19.91 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100283498 | MapMan:19.2.3.3.1.2 | UniProt:A0A1D6MQX2 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | InterPro:IPR000717 | ProteinID:ONM31405.1 | InterPro:PCI_dom |
| PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10678 | PANTHER:PTHR10678:SF3 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000842811C | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d040462 | EnsemblPlants:Zm00001d040462_P001 | EnsemblPlants:Zm00001d040462_T001 |
Description
COP9 signalosome complex subunit 2
Coordinates
chr3:-:44592736..44610510
Molecular Weight (calculated)
52494.0 Da
IEP (calculated)
5.487
GRAVY (calculated)
-0.594
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDADMEDY GFEYSDEEPE EQDVDIENQS QMLVVTASPS SFSSWNGLVE TDPEGALAGF DQVVSMEPEK AEWGFKALKQ TVKLYYKLGK YKEMMDAYRE
101: MLTYIKSAVT RNYSEKCINN IMDFVSGSAS QNFTLLQEFY QTTLKALEEA KNERLWFKTN LKLCKIWFDI GEYGRMSKIL KELHKSCQRE DGSDDQKKGT
201: QLLEVYAIEI QMYTETKNNK KLKELYQRAL SIKSAIPHPR IMGIIRECGG KMHMAERQWA EAATDFFEAF KNYDEAGNPR RIQCLKYLVL ANMLMESEVN
301: PFDGQEAKPY KNDPEILAMT NLIAAYQKND IMEFEKILKS NRRTIMDDPF IRNYIEDLLK NIRTQVLLKL IKPYTRIRIP FISQELNFPE KDVEQLLVSL
401: ILDNRIQGHI DQVNKLLERG ERSKGMRKYN AIDKWNTQLK SIYQTLSNRV
101: MLTYIKSAVT RNYSEKCINN IMDFVSGSAS QNFTLLQEFY QTTLKALEEA KNERLWFKTN LKLCKIWFDI GEYGRMSKIL KELHKSCQRE DGSDDQKKGT
201: QLLEVYAIEI QMYTETKNNK KLKELYQRAL SIKSAIPHPR IMGIIRECGG KMHMAERQWA EAATDFFEAF KNYDEAGNPR RIQCLKYLVL ANMLMESEVN
301: PFDGQEAKPY KNDPEILAMT NLIAAYQKND IMEFEKILKS NRRTIMDDPF IRNYIEDLLK NIRTQVLLKL IKPYTRIRIP FISQELNFPE KDVEQLLVSL
401: ILDNRIQGHI DQVNKLLERG ERSKGMRKYN AIDKWNTQLK SIYQTLSNRV
001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
Arabidopsis Description
CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.