Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92695 | Sorghum | cytosol, nucleus, plastid | 90.43 | 99.5 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 87.02 | 95.74 |
| TraesCS4B01G262600.1 | Wheat | golgi | 86.33 | 94.99 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 86.33 | 94.99 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 86.1 | 94.74 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 85.88 | 94.49 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 81.55 | 89.72 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 75.17 | 86.39 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 77.9 | 86.15 |
| KRH23810 | Soybean | cytosol | 77.22 | 85.39 |
| KRH39972 | Soybean | cytosol | 77.22 | 85.39 |
| Solyc04g080160.2.1 | Tomato | cytosol | 77.22 | 85.39 |
| PGSC0003DMT400013225 | Potato | cytosol | 76.99 | 85.14 |
| AT5G42970.1 | Thale cress | cytosol | 76.08 | 84.13 |
| CDY22374 | Canola | cytosol | 74.94 | 82.87 |
| CDX71533 | Canola | cytosol | 74.94 | 82.87 |
| Bra033654.1-P | Field mustard | cytosol | 74.94 | 82.87 |
| CDY02426 | Canola | cytosol | 74.49 | 82.37 |
| Bra035336.1-P | Field mustard | cytosol | 74.49 | 82.37 |
| CDY61016 | Canola | cytosol | 74.26 | 82.12 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 30.3 | 76.0 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100192688 | MapMan:19.2.3.3.1.4 | UniProt:A0A1D6JSD8 | InterPro:CSN4 | ncoils:Coil |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0010971 | GO:GO:0019538 | GO:GO:0043234 | InterPro:IPR000717 | InterPro:IPR036388 |
| ProteinID:ONL94828.1 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004DEA5C5 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| EnsemblPlantsGene:Zm00001d028143 | EnsemblPlants:Zm00001d028143_P002 | EnsemblPlants:Zm00001d028143_T002 | SEG:seg | : | : |
Description
COP9 signalosome complex subunit 4
Coordinates
chr1:+:24000830..24011578
Molecular Weight (calculated)
49496.3 Da
IEP (calculated)
4.702
GRAVY (calculated)
-0.194
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSLASAAA IADQRQKIEQ YRHILASVLS SSPPDISQAK RFLDHMVSDE VPLVVSRQLL QTFAQDLGKL ESDAQKEVAH YALTQIQPRV VSFEEQVVVI
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDAVNAEA FINKASFLVT NSHQEVLNLQ YKVCYARILD LKRRFLEAAL
201: RYYDISQIEQ RKIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKVVQQIPIN LDVYGFSGKY GLTEIIASGL SWVVSDLVQC QPDERCSKLK
301: IYPILQKVYL ERILRKPEID AFAEELRPHQ KALLPDKSTV LDRAMIEHNL LSASKLYTNI SFDELGTLLG IDPRKAEKIA SRMIYEDRMR GSIDQVEAVI
401: HFDDDTEELQ QWDQQIAGLC QALNDILDSM SSKGITIPV
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDAVNAEA FINKASFLVT NSHQEVLNLQ YKVCYARILD LKRRFLEAAL
201: RYYDISQIEQ RKIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKVVQQIPIN LDVYGFSGKY GLTEIIASGL SWVVSDLVQC QPDERCSKLK
301: IYPILQKVYL ERILRKPEID AFAEELRPHQ KALLPDKSTV LDRAMIEHNL LSASKLYTNI SFDELGTLLG IDPRKAEKIA SRMIYEDRMR GSIDQVEAVI
401: HFDDDTEELQ QWDQQIAGLC QALNDILDSM SSKGITIPV
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.