Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P19410_001 | Banana | cytosol | 90.58 | 86.72 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 87.17 | 83.46 |
| TraesCS4B01G262600.1 | Wheat | golgi | 86.91 | 83.21 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 86.91 | 83.21 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 86.39 | 82.71 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 86.39 | 82.71 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 85.6 | 82.37 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 85.86 | 82.21 |
| KRH23810 | Soybean | cytosol | 85.34 | 82.12 |
| KRH39972 | Soybean | cytosol | 85.34 | 82.12 |
| Solyc04g080160.2.1 | Tomato | cytosol | 85.08 | 81.86 |
| PGSC0003DMT400013225 | Potato | cytosol | 84.82 | 81.61 |
| AT5G42970.1 | Thale cress | cytosol | 81.41 | 78.34 |
| Bra033654.1-P | Field mustard | cytosol | 79.84 | 76.83 |
| CDY22374 | Canola | cytosol | 79.84 | 76.83 |
| CDY02426 | Canola | cytosol | 79.84 | 76.83 |
| CDX71533 | Canola | cytosol | 79.84 | 76.83 |
| Bra035336.1-P | Field mustard | cytosol | 79.84 | 76.83 |
| CDY61016 | Canola | cytosol | 79.58 | 76.57 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 35.08 | 76.57 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 86.39 | 75.17 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.3.3.1.4 | InterPro:CSN4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0008180 | EnsemblPlantsGene:GSMUA_Achr8G31220_001 | EnsemblPlants:GSMUA_Achr8P31220_001 | EnsemblPlants:GSMUA_Achr8T31220_001 |
| InterPro:IPR000717 | InterPro:IPR036388 | UniProt:M0TV74 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 |
| PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0002966ED3 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : | : | : |
Description
COP9 signalosome complex subunit 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G31220_001]
Coordinates
chr8:+:32966156..32972753
Molecular Weight (calculated)
43472.3 Da
IEP (calculated)
4.672
GRAVY (calculated)
-0.176
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVLATAAA ITDQRQKIEQ YKLILASVLS SSSTDVTQAK RFIDHMVSDE VPLMVSRQLL LTFAQELGRL ETDVQKEIAH YGLAQIQPRV VSFEEQVLII
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTYKLS KCVQIARLYL EDDDAVNAEA FINKASFLVN NSQHEVLNLQ YKVCYARILD LKRKFLEAAL
201: HYYGISQIEQ RQIGDEEIDE DALEQALSAA VTCTILAAAG PQRSRVLATL YKDERCSKLK IYPILQKVNL ERILRKPEID AFAEELKAHQ KALLPDNFTV
301: LDRAMIEHNL LSASKLYTNI SFEELGALLG IPPQKAEKIA ARMIYEDRMR GLIDQVEAVI YFEDDTEELR QWDQQACLTC TC
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTYKLS KCVQIARLYL EDDDAVNAEA FINKASFLVN NSQHEVLNLQ YKVCYARILD LKRKFLEAAL
201: HYYGISQIEQ RQIGDEEIDE DALEQALSAA VTCTILAAAG PQRSRVLATL YKDERCSKLK IYPILQKVNL ERILRKPEID AFAEELKAHQ KALLPDNFTV
301: LDRAMIEHNL LSASKLYTNI SFEELGALLG IPPQKAEKIA ARMIYEDRMR GLIDQVEAVI YFEDDTEELR QWDQQACLTC TC
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.