Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G262600.1 | Wheat | golgi | 99.25 | 99.25 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 99.25 | 99.25 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 99.0 | 99.0 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 94.49 | 94.49 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 93.73 | 93.73 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 88.72 | 88.72 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 82.71 | 86.39 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 94.49 | 85.88 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 84.96 | 85.39 |
| KRH23810 | Soybean | cytosol | 84.21 | 84.63 |
| Solyc04g080160.2.1 | Tomato | cytosol | 84.21 | 84.63 |
| KRH39972 | Soybean | cytosol | 83.96 | 84.38 |
| PGSC0003DMT400013225 | Potato | cytosol | 83.96 | 84.38 |
| AT5G42970.1 | Thale cress | cytosol | 83.21 | 83.63 |
| CDY61016 | Canola | cytosol | 81.7 | 82.12 |
| CDY02426 | Canola | cytosol | 81.7 | 82.12 |
| Bra035336.1-P | Field mustard | cytosol | 81.7 | 82.12 |
| CDY22374 | Canola | cytosol | 81.45 | 81.86 |
| Bra033654.1-P | Field mustard | cytosol | 81.45 | 81.86 |
| CDX71533 | Canola | cytosol | 81.2 | 81.61 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 33.58 | 76.57 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G041600.1 | EnsemblPlantsGene:TraesCS4A01G041600 | Gene3D:1.10.10.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008180 | InterPro:CSN4 | InterPro:IPR000717 | InterPro:IPR036388 | InterPro:PCI_dom |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF2 | PFAM:PF01399 | PFscan:PS50250 |
| SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | MapMan:19.2.3.3.1.4 | : |
Description
No Description!
Coordinates
chr4A:+:35174302..35179802
Molecular Weight (calculated)
44937.0 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.197
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSALASAAA IADQRQKIEQ YRHILASVIS SSPPDIPQAK RFLNHMVSDE VPLVVSRQLL QTFAQELGKL EPDSQKEVAH YALTQIQPRV VSFEEQVVVI
101: REKLAELYES EQQWSSAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDAVNAEA FINKASFLVT NSNQEVLNLQ YKVCYARILD LKRKFLEAAL
201: RYYGISQIEQ RQIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKDERCLKLK IYPILQKVFL ERILRKPEID AFAEELKPHQ KALLPDKSTV
301: LERAMIEHNL LSASKLYTNI SFEELGTLLG IDPRKAEKIA CRMICEDRMR GSIDQVEAVI HFEDDTEGLQ QWDQQIAGLC QALNDILDSM SSKGIAIPV
101: REKLAELYES EQQWSSAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDAVNAEA FINKASFLVT NSNQEVLNLQ YKVCYARILD LKRKFLEAAL
201: RYYGISQIEQ RQIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKDERCLKLK IYPILQKVFL ERILRKPEID AFAEELKPHQ KALLPDKSTV
301: LERAMIEHNL LSASKLYTNI SFEELGTLLG IDPRKAEKIA CRMICEDRMR GSIDQVEAVI HFEDDTEGLQ QWDQQIAGLC QALNDILDSM SSKGIAIPV
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.