Factsheet for Os03t0197400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os01t0279200-02
Os01t0853400-01
Os01t0935300-02
Os03t0116500-01
Os03t0197400-01
Os03t0265500-01
Os04t0428900-01
Os04t0654700-02
Os05t0193900-00
Os05t0449500-01
Os07t0490800-01
Os07t0577400-01
Os08t0119000-01
Os08t0500000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42970.1	Os07t0490800-01	AT1G02090.1	11742986
AT5G42970.1	Os07t0490800-01	AT1G02090.1	11854419
AT5G42970.1	Os07t0490800-01	AT1G02090.1	12615944
AT5G42970.1	Os04t0654700-02	AT1G22920.1	12615944
AT5G42970.1	Os01t0194300-01	AT1G64280.1	19490895
AT5G42970.1	Os04t0654700-02	AT1G71230.1	11742986
AT5G42970.1	Os01t0279200-02	AT2G26990.1	12615944
AT5G42970.1	Os01t0853400-01	AT2G39940.1	12724535
AT5G42970.1	Os03t0265500-01	AT2G39940.1	12724535
AT5G42970.1	Os05t0449500-01	AT2G39940.1	12724535
AT5G42970.1	Os07t0577400-01	AT3G13550.1	11877375
AT5G42970.1	Os03t0116500-01	AT3G61140.1	11854419
AT5G42970.1	Os03t0116500-01	AT3G61140.1	12615944
AT5G42970.1	Os01t0935300-02	AT4G02570.1	12724535
AT5G42970.1	Os05t0193900-00	AT4G02570.1	12724535
AT5G42970.1	Os04t0428900-01	AT4G14110.1	11854419
AT5G42970.1	Os04t0428900-01	AT4G14110.1	12615944
AT5G42970.1	Os08t0119000-01	AT5G14250.1	11742986
AT5G42970.1	Os08t0119000-01	AT5G14250.1	12615944
AT5G42970.1	Os08t0119000-01	AT5G14250.1	12724535
AT5G42970.1	Os03t0197400-01	AT5G42970.1	12615944
AT5G42970.1	Os08t0500000-01	AT5G56280.1	11701877
AT5G42970.1	Os08t0500000-01	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92695	Sorghum	cytosol, nucleus, plastid	95.74	95.74
TraesCS4B01G262600.1	Wheat	golgi	94.24	94.24
HORVU4Hr1G070980.1	Barley	cytosol	94.24	94.24
TraesCS4D01G262700.1	Wheat	cytosol, nucleus, plastid	93.98	93.98
TraesCS4A01G041600.1	Wheat	cytosol, nucleus, plastid	93.73	93.73
GSMUA_Achr9P19410_001	Banana	cytosol	88.97	88.97
Zm00001d028143_P002	Maize	cytosol, nucleus, plastid	95.74	87.02
VIT_18s0001g12250.t01	Wine grape	cytosol	85.96	86.4
GSMUA_Achr8P31220_001	Banana	cytosol	82.21	85.86
Solyc04g080160.2.1	Tomato	cytosol	84.71	85.14
PGSC0003DMT400013225	Potato	cytosol	84.46	84.89
AT5G42970.1	Thale cress	cytosol	84.46	84.89
KRH23810	Soybean	cytosol	84.21	84.63
KRH39972	Soybean	cytosol	84.21	84.63
CDY22374	Canola	cytosol	82.71	83.12
Bra033654.1-P	Field mustard	cytosol	82.71	83.12
CDX71533	Canola	cytosol	82.46	82.87
CDY02426	Canola	cytosol	81.95	82.37
Bra035336.1-P	Field mustard	cytosol	81.95	82.37
CDY61016	Canola	cytosol	81.7	82.12
VIT_12s0035g01450.t01	Wine grape	mitochondrion	33.08	75.43

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.3.3.1.4	EntrezGene:4331948	ProteinID:ABF94467.1	EMBL:AK071413	ProteinID:BAF11186.1
ProteinID:BAS82783.1	InterPro:CSN4	ProteinID:EEE58505.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0010971	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	InterPro:IPR000717	InterPro:IPR036388
EnsemblPlantsGene:Os03g0197400	EnsemblPlants:Os03t0197400-01	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10855
PANTHER:PTHR10855:SF2	UniProt:Q10QG2	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0000DB48B0
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015632768.1	SEG:seg	:	:

Description

Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os03t0197400-01);Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os03t0197400-02)

Coordinates

chr3:-:5119305..5124613

Molecular Weight (calculated)

45329.3 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.259

Length

399 amino acids

Sequence
(BLAST)

001: MDNALASAAA IADQRQKIEQ YRHILSSVLS FSPPDISQAK RFLDHMVSDE VPLVVSRQLL QTFAQELGRL EPEAQKEVAH YALTQIQPRV VSFEEQVVVI
101: REKLAELYES EQQWSKAAQM LSGIDLDSGI RMLDDTNKLS KCVQIARLYL EDDDSVNAEA FINKASFLVT NSHQELLNLQ YKVCYARILD LKRRFLEAAL
201: RYYDISQIEQ RQIGDEEIDE NALEQALSAA VTCTILAGAG PQRSRVLATL YKDERCSKLK IYPILQKVFL ERILRKPEIE AFAEELRPHQ KALLPDKSTV
301: LDRAMIEHNL LSASKLYTNI SFDELGALLG IDPRKAEKIA SRMIYEDRMR GSIDQVEAVI HFEDDTEELQ QWDQQIAGLC QALNDILDSM SSKGMAIPV

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.