Factsheet for Os03t0116500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0279200-02
Os02t0123300-00
Os03t0116500-01
Os03t0197400-01
Os04t0428900-01
Os04t0654700-02
Os07t0124500-01
Os07t0490800-01
Os08t0119000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61140.1	Os07t0490800-01	AT1G02090.1	10330469
AT3G61140.1	Os07t0490800-01	AT1G02090.1	11742986
AT3G61140.1	Os07t0490800-01	AT1G02090.1	11854419
AT3G61140.1	Os07t0490800-01	AT1G02090.1	12615944
AT3G61140.1	Os04t0654700-02	AT1G22920.1	12615944
AT3G61140.1	Os04t0654700-02	AT1G22920.1	9811788
AT3G61140.1	Os04t0654700-02	AT1G71230.1	9811788
AT3G61140.1	Os01t0279200-02	AT2G26990.1	11854419
AT3G61140.1	Os01t0279200-02	AT2G26990.1	12615944
AT3G61140.1	Os02t0123300-00	AT3G56150.1	11029466
AT3G61140.1	Os07t0124500-01	AT3G56150.1	11029466
AT3G61140.1	Os03t0116500-01	AT3G61140.1	12615944
AT3G61140.1	Os04t0428900-01	AT4G14110.1	11701877
AT3G61140.1	Os04t0428900-01	AT4G14110.1	12615944
AT3G61140.1	Os04t0428900-01	AT4G14110.1	9811788
AT3G61140.1	Os08t0119000-01	AT5G14250.1	12615944
AT3G61140.1	Os03t0197400-01	AT5G42970.1	11854419
AT3G61140.1	Os03t0197400-01	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92981	Sorghum	cytosol	87.98	87.58
Zm00001d027359_P001	Maize	cytosol, extracellular	87.07	86.29
TraesCS4D01G350200.1	Wheat	cytosol, golgi	84.81	83.86
TraesCS4B01G356500.1	Wheat	cytosol	84.58	83.45
TraesCS5A01G525900.1	Wheat	cytosol, unclear	84.35	83.41
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	21.09	83.04
Zm00001d048502_P002	Maize	cytosol	28.34	73.1
GSMUA_Achr11P...	Banana	cytosol	73.7	71.9
VIT_15s0048g01980.t01	Wine grape	cytosol	71.88	71.88
KRH65148	Soybean	cytosol	71.66	71.17
GSMUA_Achr11P...	Banana	cytosol	72.56	71.11
PGSC0003DMT400071374	Potato	cytosol	70.75	70.91
Solyc01g091650.2.1	Tomato	cytosol	70.75	70.91
GSMUA_Achr8P11930_001	Banana	cytosol	72.79	70.7
KRH48239	Soybean	cytosol	70.75	69.96
AT3G61140.1	Thale cress	cytosol	68.48	68.48
HORVU4Hr1G086160.1	Barley	cytosol	84.58	67.82
CDY45683	Canola	cytosol	69.61	67.77
Bra003438.1-P	Field mustard	cytosol	69.16	67.33
CDX67853	Canola	cytosol	69.16	67.33
CDY52333	Canola	cytosol	67.57	67.12
Bra007576.1-P	Field mustard	cytosol	66.21	66.97
CDY65304	Canola	cytosol	67.12	66.82
HORVU6Hr1G027500.11	Barley	plastid	42.86	66.55
Os04t0485000-01	Rice	plasma membrane	19.27	21.85
Os01t0974900-00	Rice	cytosol	0.68	3.41

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.1	EntrezGene:4331403	ProteinID:ABF93653.1	EMBL:AK101870	ProteinID:BAF10674.1
ProteinID:BAS81981.1	InterPro:CSN1	ncoils:Coil	ProteinID:EAZ25359.1	GO:GO:0000003	GO:GO:0000338
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0006950	GO:GO:0006972	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009628	GO:GO:0009646	GO:GO:0009651	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000717	EnsemblPlantsGene:Os03g0116500	EnsemblPlants:Os03t0116500-01
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	PANTHER:PTHR14145	PANTHER:PTHR14145:SF2
UniProt:Q10SN3	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0000DB4471
InterPro:WH_DNA-bd_sf	RefSeq:XP_015631614.1	SEG:seg	:	:	:

Description

Constitutive photomorphogenic 11. (Os03t0116500-01)

Coordinates

chr3:-:935129..939195

Molecular Weight (calculated)

49832.6 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.311

Length

441 amino acids

Sequence
(BLAST)

001: MDVEGEVPAA AAEAVANGLG GAEPSPAPVS AEQLDVEAYA AQYTGRTRLA RLLFIAERCG VEAVELEALR MAYDEIKRGE DTMFHREVTN KINGRLGPKY
101: ALDQAWTDSV NRRAEQRKEK LESELNGYRT NLIKESIRMG YNDIGDFFYA HGHLSDAFKS YIRTRDYCTT SKHIVQMCMN VILVSIELGQ FPHVSNYVSK
201: AEQTPDTLDP IIVAKLRAAA GLAYLATKKY KLAARKFVET GHELGNNYSE VIAPQDVAVY GALCALASFD RSDLKSKVID NSNFRNFLEL VPEVRELVND
301: FYSSRYGSCL EHLEKLKTNL LLDIHLHDHV ETLYMDIRHK AIIQYTLPFI SVDLNTMAAA FMTSVSMLEK ELAALITENK IQARIDSHNK ILYARHADQR
401: NATFQRVLQT GNEFERDVKS LLLRANLIKH DFNQRAGQRK M

Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)

001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L

Arabidopsis Description

CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.