Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45683 | Canola | cytosol | 90.48 | 88.08 |
| Bra003438.1-P | Field mustard | cytosol | 90.02 | 87.64 |
| Bra007576.1-P | Field mustard | cytosol | 86.62 | 87.61 |
| CDX67853 | Canola | cytosol | 89.8 | 87.42 |
| CDY65304 | Canola | cytosol | 87.76 | 87.36 |
| CDY52333 | Canola | cytosol | 87.53 | 86.94 |
| Solyc01g091650.2.1 | Tomato | cytosol | 77.78 | 77.95 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 77.78 | 77.78 |
| PGSC0003DMT400071374 | Potato | cytosol | 77.32 | 77.5 |
| KRH65148 | Soybean | cytosol | 78.0 | 77.48 |
| KRH48239 | Soybean | cytosol | 77.32 | 76.46 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 17.91 | 70.54 |
| Os03t0116500-01 | Rice | cytosol | 68.48 | 68.48 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 69.61 | 67.62 |
| GSMUA_Achr11P... | Banana | cytosol | 69.16 | 67.48 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 58.5 | 67.36 |
| EER92981 | Sorghum | cytosol | 67.35 | 67.04 |
| GSMUA_Achr11P... | Banana | cytosol | 67.8 | 66.44 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 66.89 | 66.14 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 66.67 | 66.07 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 66.67 | 65.77 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 66.44 | 65.7 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 63.04 | 63.76 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 63.49 | 62.36 |
| HORVU1Hr1G048620.1 | Barley | plastid | 63.49 | 57.49 |
| HORVU6Hr1G027500.11 | Barley | plastid | 35.15 | 54.58 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 64.63 | 51.82 |
| Zm00001d048502_P002 | Maize | cytosol | 19.95 | 51.46 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 32.88 | 43.54 |
| TraesCS7B01G257700.1 | Wheat | plastid | 39.46 | 25.48 |
| AT4G24820.1 | Thale cress | cytosol | 16.78 | 19.12 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | PDB:4LCT | EntrezGene:825286 | UniProt:A0A178VFN7 | ProteinID:AAA32792.1 |
| ProteinID:AEE80160.1 | EMBL:AF360295 | EMBL:AF395057 | EMBL:AK117532 | ArrayExpress:AT3G61140 | EnsemblPlantsGene:AT3G61140 |
| RefSeq:AT3G61140 | TAIR:AT3G61140 | RefSeq:AT3G61140-TAIR-G | EnsemblPlants:AT3G61140.1 | TAIR:AT3G61140.1 | EMBL:AY051056 |
| Unigene:At.303 | ProteinID:CAB71044.1 | ProteinID:CAB91509.1 | InterPro:CSN1 | ncoils:Coil | Symbol:FUS6 |
| GO:GO:0000003 | GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006461 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006972 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009646 | GO:GO:0009651 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 |
| GO:GO:0010017 | GO:GO:0016043 | GO:GO:0019538 | InterPro:IPR000717 | RefSeq:NP_567109.1 | ProteinID:OAP05247.1 |
| UniProt:P45432 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 |
| InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0000128554 | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
Coordinates
chr3:+:22626167..22630141
Molecular Weight (calculated)
50581.8 Da
IEP (calculated)
7.338
GRAVY (calculated)
-0.408
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.