Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11930_001 | Banana | cytosol | 84.89 | 84.14 |
| GSMUA_Achr11P... | Banana | cytosol | 83.78 | 83.41 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 18.67 | 75.0 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 72.89 | 74.38 |
| EER92981 | Sorghum | cytosol | 71.78 | 72.91 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 62.0 | 72.85 |
| Os03t0116500-01 | Rice | cytosol | 71.11 | 72.56 |
| Solyc01g091650.2.1 | Tomato | cytosol | 70.67 | 72.27 |
| PGSC0003DMT400071374 | Potato | cytosol | 70.67 | 72.27 |
| KRH65148 | Soybean | cytosol | 70.67 | 71.62 |
| KRH48239 | Soybean | cytosol | 70.89 | 71.52 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 69.78 | 70.56 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 69.56 | 70.18 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 69.33 | 69.96 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 69.33 | 69.8 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 67.11 | 69.27 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 68.0 | 68.15 |
| AT3G61140.1 | Thale cress | cytosol | 66.44 | 67.8 |
| CDY45683 | Canola | cytosol | 66.0 | 65.56 |
| CDY52333 | Canola | cytosol | 64.67 | 65.54 |
| Bra007576.1-P | Field mustard | cytosol | 63.33 | 65.37 |
| CDY65304 | Canola | cytosol | 64.22 | 65.24 |
| CDX67853 | Canola | cytosol | 65.56 | 65.12 |
| Bra003438.1-P | Field mustard | cytosol | 65.56 | 65.12 |
| HORVU1Hr1G048620.1 | Barley | plastid | 67.33 | 62.22 |
| HORVU6Hr1G027500.11 | Barley | plastid | 38.44 | 60.92 |
| Zm00001d048502_P002 | Maize | cytosol | 22.44 | 59.06 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 69.33 | 56.73 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 34.67 | 46.85 |
| TraesCS7B01G257700.1 | Wheat | plastid | 41.78 | 27.53 |
| GSMUA_Achr6P12080_001 | Banana | cytosol | 18.0 | 20.98 |
| GSMUA_Achr8P16370_001 | Banana | cytosol | 17.56 | 20.47 |
| GSMUA_Achr10P... | Banana | cytosol | 16.89 | 19.69 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr11G03240_001 | EnsemblPlants:GSMUA_Achr11P03240_001 | EnsemblPlants:GSMUA_Achr11T03240_001 |
| InterPro:IPR000717 | UniProt:M0RP04 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 |
| PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI0002965BC4 | InterPro:WH_DNA-bd_sf | : | : | : | : |
Description
COP9 signalosome complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G03240_001]
Coordinates
chr11:+:2335261..2344372
Molecular Weight (calculated)
50741.0 Da
IEP (calculated)
7.458
GRAVY (calculated)
-0.358
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEGVVVGAP MGHEAMCSNG GAVDEPRRPP TSRAGKGAAG GELMDVEAYA ALYTGRTKVA RLLFIAERCG NEAMQLEALR MAHDEIKKAE DSHLHREVTA
101: KIGGRLGPRY ALDQSWADTV DRRADVRKEK LENELNGYKT NLIKESIRMG YNDLADFFYD HGQLGDALKN YVRTRDYCTT SKHLIHMCLS VILVSIELGQ
201: FMHVSNYASK AEQTPEQLDL VTHSKLRCAA GLAYLETKKY KLAARKFLET GPELGNNYTD MIAPQDVAIY GGLCALASFD RTELKNKVID NINFRNFLEL
301: VPEVRELIND FYASRYASCL EYLEKLKPNL LLDIHLHDHV ETLYTEIRHK AIIQYTHPFI SVDLHMMAGA FKTNVAGLEK ELKALITDNQ IQARIDSHNK
401: ILYARHADQR NATFQRALQT GVEFERDVRA VLVRANLIKQ ESILKAAKKP
101: KIGGRLGPRY ALDQSWADTV DRRADVRKEK LENELNGYKT NLIKESIRMG YNDLADFFYD HGQLGDALKN YVRTRDYCTT SKHLIHMCLS VILVSIELGQ
201: FMHVSNYASK AEQTPEQLDL VTHSKLRCAA GLAYLETKKY KLAARKFLET GPELGNNYTD MIAPQDVAIY GGLCALASFD RTELKNKVID NINFRNFLEL
301: VPEVRELIND FYASRYASCL EYLEKLKPNL LLDIHLHDHV ETLYTEIRHK AIIQYTHPFI SVDLHMMAGA FKTNVAGLEK ELKALITDNQ IQARIDSHNK
401: ILYARHADQR NATFQRALQT GVEFERDVRA VLVRANLIKQ ESILKAAKKP
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.