Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G027500.11 | Barley | plastid | 67.86 | 26.76 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 91.96 | 23.09 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 91.96 | 23.04 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 91.07 | 22.87 |
| EER92981 | Sorghum | cytosol | 84.82 | 21.44 |
| Os03t0116500-01 | Rice | cytosol | 83.04 | 21.09 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 83.04 | 20.9 |
| KRH65148 | Soybean | cytosol | 75.89 | 19.14 |
| PGSC0003DMT400071374 | Potato | cytosol | 75.0 | 19.09 |
| Solyc01g091650.2.1 | Tomato | cytosol | 75.0 | 19.09 |
| KRH48239 | Soybean | cytosol | 75.0 | 18.83 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 74.11 | 18.82 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 91.96 | 18.73 |
| GSMUA_Achr11P... | Banana | cytosol | 75.0 | 18.67 |
| GSMUA_Achr11P... | Banana | cytosol | 75.0 | 18.58 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 74.11 | 18.28 |
| AT3G61140.1 | Thale cress | cytosol | 70.54 | 17.91 |
| CDY45683 | Canola | cytosol | 71.43 | 17.66 |
| CDY65304 | Canola | cytosol | 69.64 | 17.61 |
| CDY52333 | Canola | cytosol | 69.64 | 17.57 |
| HORVU1Hr1G048620.1 | Barley | plastid | 75.89 | 17.45 |
| Bra003438.1-P | Field mustard | cytosol | 70.54 | 17.44 |
| CDX67853 | Canola | cytosol | 70.54 | 17.44 |
| Bra007576.1-P | Field mustard | cytosol | 64.29 | 16.51 |
| HORVU2Hr1G083860.1 | Barley | cytosol | 21.43 | 6.19 |
| HORVU0Hr1G004970.2 | Barley | cytosol | 21.43 | 6.08 |
| HORVU6Hr1G054100.2 | Barley | cytosol, nucleus | 21.43 | 5.7 |
| Zm00001d048502_P002 | Maize | cytosol | 4.46 | 2.92 |
| HORVU7Hr1G069880.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G029090.1 | EnsemblPlantsGene:HORVU0Hr1G029090 | Gene3D:1.25.40.570 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:CSN1 | InterPro:Rpn7/CSN1 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 |
| PFAM:PF10602 | SignalP:SignalP-noTM | UniParc:UPI000B46BE75 | UniProt:A0A287E9R6 | MapMan:19.2.3.3.1.1 | : |
Description
No Description!
Coordinates
chrchrUn:+:157817934..157821012
Molecular Weight (calculated)
12186.8 Da
IEP (calculated)
5.696
GRAVY (calculated)
0.146
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MCMHVILVSL ELGQFAHVVN YVSKAEQAPD TLDDVIVAKL PAAAGLANLE TKKYKLAARK FLETGPELGS NYSEVIAPQD MAVYGALCAL ASFDRSELKS
101: KVIDNINFRQ LS
101: KVIDNINFRQ LS
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.