Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007576.1-P | Field mustard | cytosol | 97.52 | 99.31 |
| CDY65304 | Canola | cytosol | 97.3 | 97.52 |
| CDX67853 | Canola | cytosol | 91.89 | 90.07 |
| CDY45683 | Canola | cytosol | 91.44 | 89.62 |
| AT3G61140.1 | Thale cress | cytosol | 86.94 | 87.53 |
| Solyc01g091650.2.1 | Tomato | cytosol | 75.68 | 76.36 |
| PGSC0003DMT400071374 | Potato | cytosol | 75.23 | 75.91 |
| KRH65148 | Soybean | cytosol | 74.77 | 74.77 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 73.87 | 74.38 |
| KRH48239 | Soybean | cytosol | 74.32 | 73.99 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 17.57 | 69.64 |
| Os03t0116500-01 | Rice | cytosol | 67.12 | 67.57 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 58.11 | 67.36 |
| GSMUA_Achr11P... | Banana | cytosol | 67.79 | 66.59 |
| EER92981 | Sorghum | cytosol | 66.44 | 66.59 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 66.44 | 66.14 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 66.22 | 66.07 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 66.22 | 65.77 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 65.99 | 65.7 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 66.22 | 64.76 |
| GSMUA_Achr11P... | Banana | cytosol | 65.54 | 64.67 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 62.39 | 63.53 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 62.39 | 61.69 |
| HORVU1Hr1G048620.1 | Barley | plastid | 62.39 | 56.88 |
| HORVU6Hr1G027500.11 | Barley | plastid | 35.14 | 54.93 |
| Zm00001d048502_P002 | Maize | cytosol | 20.5 | 53.22 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 64.19 | 51.82 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 33.56 | 44.74 |
| TraesCS7B01G257700.1 | Wheat | plastid | 39.41 | 25.62 |
| CDX75945 | Canola | cytosol | 21.62 | 25.53 |
| CDY34315 | Canola | cytosol | 16.67 | 19.12 |
| CDY03414 | Canola | cytosol | 16.67 | 19.12 |
| CDX92654 | Canola | cytosol | 16.67 | 19.12 |
| CDY08956 | Canola | extracellular, golgi | 11.94 | 15.87 |
| CDX79636 | Canola | cytosol, nucleus, peroxisome | 12.61 | 11.86 |
| CDY34374 | Canola | nucleus | 3.15 | 11.29 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A078ITD9 | EnsemblPlants:CDY52333 | ProteinID:CDY52333 | ProteinID:CDY52333.1 |
| InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0010388 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00006762001 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EE64A6 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
BnaA09g38820DBnaA09g38820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITD9]
Coordinates
chrLK033079:-:20999..23727
Molecular Weight (calculated)
50570.7 Da
IEP (calculated)
7.145
GRAVY (calculated)
-0.405
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDDESNGP MMELCTNGGG EETSNRRPII TGEPLDIEAY AAMYKGRTKI MRLLFIANHC GGGNQTMQLE ALRMAYDEVK KGENTQLFRD VVSKINGRLG
101: DKYGMDSAWC EMIDRRAEQR KGKLENELSS YRTNLIKESI RMGHNDFGDF YYACGLLNEA FKNYIKTRDY CTTAKHIIHM CMNAILVSIE MGQFSHVSSY
201: VNKVDQNPET LDPIVAAKLR CASGLAHLEL KKYKLAARKF LDVNPELGSS YNEVIAPQDV ATYGGLCALA SFDRSELKAY AKVIDNISFR NFLELVPEVR
301: ELINDFYSSR YASCLEYLGS LRANLLLDIH LHDHVDTLYD QIRKKALIQY TLPFVSVDLS RMADAFKTSV SGLEKELEAL ITDDQIQARI DSHNKILYAR
401: HADQRSATFQ KVLQMGNEFD RDVRSMMLRA NLLKHEFHAK GRKP
101: DKYGMDSAWC EMIDRRAEQR KGKLENELSS YRTNLIKESI RMGHNDFGDF YYACGLLNEA FKNYIKTRDY CTTAKHIIHM CMNAILVSIE MGQFSHVSSY
201: VNKVDQNPET LDPIVAAKLR CASGLAHLEL KKYKLAARKF LDVNPELGSS YNEVIAPQDV ATYGGLCALA SFDRSELKAY AKVIDNISFR NFLELVPEVR
301: ELINDFYSSR YASCLEYLGS LRANLLLDIH LHDHVDTLYD QIRKKALIQY TLPFVSVDLS RMADAFKTSV SGLEKELEAL ITDDQIQARI DSHNKILYAR
401: HADQRSATFQ KVLQMGNEFD RDVRSMMLRA NLLKHEFHAK GRKP
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.