Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023916_P001 | Maize | cytosol | 51.61 | 68.09 |
| Bra033219.1-P | Field mustard | cytosol | 100.0 | 65.26 |
| Zm00001d020231_P001 | Maize | cytosol | 69.35 | 63.24 |
| CDY15130 | Canola | extracellular | 87.1 | 48.21 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 59.68 | 30.58 |
| AT1G02090.1 | Thale cress | cytosol | 85.48 | 20.38 |
| CDY00413 | Canola | cytosol | 83.87 | 20.0 |
| CDY01302 | Canola | nucleus | 83.87 | 20.0 |
| CDY38053 | Canola | cytosol | 83.87 | 19.85 |
| Solyc01g090290.2.1 | Tomato | cytosol | 79.03 | 18.92 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 79.03 | 18.92 |
| KRH20583 | Soybean | cytosol | 77.42 | 18.53 |
| Zm00001d004607_P001 | Maize | nucleus | 48.39 | 18.18 |
| KRH13242 | Soybean | cytosol | 75.81 | 18.15 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 72.58 | 17.24 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 70.97 | 16.99 |
| KXG36255 | Sorghum | nucleus | 70.97 | 16.86 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 70.97 | 16.86 |
| TraesCS2D01G239100.1 | Wheat | golgi | 70.97 | 16.86 |
| Zm00001d006410_P013 | Maize | nucleus | 70.97 | 16.86 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 70.97 | 16.86 |
| PGSC0003DMT400067022 | Potato | cytosol | 79.03 | 16.55 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 69.35 | 16.48 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 70.97 | 15.83 |
| KRH01071 | Soybean | nucleus | 66.13 | 14.59 |
Protein Annotations
| EnsemblPlants:CDX90073 | EnsemblPlantsGene:GSBRNA2T00150584001 | Gene3D:1.25.40.570 | PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | ProteinID:CDX90073 |
| ProteinID:CDX90073.1 | UniParc:UPI0004EE8CAB | MapMan:19.2.3.3.1.7 | : | : | : |
Description
BnaA10g00090D
Coordinates
chrLK031861:-:1558569..1558974
Molecular Weight (calculated)
7051.5 Da
IEP (calculated)
4.446
GRAVY (calculated)
-0.297
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MVELDVTNVR QLEDFLNNEC MYDGIVRGKL DQLKRCFEVP FAAGRDPRPG ELGDMLHALS NL
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKVSRAWSP IGFTFPY
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKVSRAWSP IGFTFPY
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.