Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32798 | Canola | plastid | 92.45 | 93.63 |
| AT5G56280.1 | Thale cress | plastid | 88.68 | 88.96 |
| CDX89337 | Canola | plastid | 83.02 | 83.02 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 81.13 | 81.39 |
| KRH62556 | Soybean | plastid | 80.5 | 80.5 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 77.67 | 79.94 |
| CDX94336 | Canola | plastid | 79.56 | 79.56 |
| Solyc10g005660.2.1 | Tomato | plastid | 77.99 | 79.23 |
| KRH56376 | Soybean | plastid | 79.87 | 78.88 |
| CDY42737 | Canola | plastid | 77.36 | 77.36 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 27.36 | 75.65 |
| Os08t0500000-01 | Rice | plasma membrane | 76.1 | 73.56 |
| EES14305 | Sorghum | plastid | 75.47 | 72.29 |
| TraesCS7A01G241300.1 | Wheat | plastid | 76.42 | 72.11 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 76.42 | 72.11 |
| HORVU7Hr1G049190.1 | Barley | plastid | 76.1 | 71.81 |
| Zm00001d031323_P001 | Maize | extracellular | 74.84 | 71.69 |
| TraesCS7B01G136800.1 | Wheat | plastid | 75.47 | 71.22 |
| Zm00001d052848_P004 | Maize | plastid | 74.84 | 69.79 |
| CDX92773 | Canola | plastid | 73.58 | 66.48 |
| CDX74814 | Canola | cytosol, plastid | 21.38 | 23.53 |
| CDY65775 | Canola | cytosol, plastid | 20.44 | 22.49 |
| CDY14102 | Canola | cytosol | 21.38 | 22.08 |
| CDY11340 | Canola | extracellular | 21.38 | 22.08 |
| CDY04967 | Canola | cytosol | 21.38 | 22.08 |
| CDX98863 | Canola | cytosol | 21.38 | 22.08 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 21.38 | 22.08 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 21.38 | 22.08 |
| CDY60991 | Canola | plastid | 20.13 | 21.84 |
| CDY24934 | Canola | plastid | 20.13 | 21.84 |
| CDY06213 | Canola | cytosol | 11.01 | 20.0 |
| CDX70711 | Canola | cytosol | 7.86 | 19.68 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 14.78 | 17.15 |
| CDY04139 | Canola | cytosol | 14.15 | 15.96 |
| CDX78706 | Canola | cytosol | 12.89 | 10.43 |
Protein Annotations
| MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | UniProt:A0A078IJ01 | EnsemblPlants:CDY49389 | ProteinID:CDY49389 | ProteinID:CDY49389.1 |
| GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00092944001 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN |
| InterPro:MPN_CSN6 | PFAM:PF01398 | PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 |
| InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI0001B837B1 | SEG:seg | : | : |
Description
BnaC09g53560DBnaC09g53560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ01]
Coordinates
chrLK032829:-:18904..21004
Molecular Weight (calculated)
35713.8 Da
IEP (calculated)
6.232
GRAVY (calculated)
-0.191
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPPSVCA TENASSNNGE AMLQPNPRVY GCVIGVQRGR TVEIFNSFEL LFDPSTETLD RSFLEKKQEL
101: YKKVFPDFYV LGWYSTGSDA EESDMLIHKA LMDINESPVY VLLNPAINHA QKDLPVTIYE SELHVIDGIP QLIFAHTSYT IETVEAERIS VDHVAHLKPS
201: DGGSAATQLA AHLTGIHSAI KMLNSRIRVL HQYLAAMEKG DIPCENSLLR QVSSLLRRLP AMESERFHDN FLMEYNDKLL VTYLAMITNC TSTMNEMVDK
301: FNIAYDRNAR RGGRTAFM
101: YKKVFPDFYV LGWYSTGSDA EESDMLIHKA LMDINESPVY VLLNPAINHA QKDLPVTIYE SELHVIDGIP QLIFAHTSYT IETVEAERIS VDHVAHLKPS
201: DGGSAATQLA AHLTGIHSAI KMLNSRIRVL HQYLAAMEKG DIPCENSLLR QVSSLLRRLP AMESERFHDN FLMEYNDKLL VTYLAMITNC TSTMNEMVDK
301: FNIAYDRNAR RGGRTAFM
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Arabidopsis Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.