Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32798 | Canola | plastid | 88.01 | 88.85 |
| CDY49389 | Canola | plastid | 88.96 | 88.68 |
| Bra002827.1-P | Field mustard | plastid | 87.07 | 87.9 |
| AT4G26430.1 | Thale cress | plastid | 87.38 | 87.38 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 82.65 | 82.65 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 77.92 | 79.94 |
| KRH62556 | Soybean | plastid | 79.5 | 79.25 |
| KRH56376 | Soybean | plastid | 79.81 | 78.57 |
| Solyc10g005660.2.1 | Tomato | plastid | 77.29 | 78.27 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 27.13 | 74.78 |
| Os08t0500000-01 | Rice | plasma membrane | 76.34 | 73.56 |
| EES14305 | Sorghum | plastid | 75.71 | 72.29 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 76.03 | 71.51 |
| TraesCS7A01G241300.1 | Wheat | plastid | 76.03 | 71.51 |
| HORVU7Hr1G049190.1 | Barley | plastid | 75.71 | 71.22 |
| Zm00001d031323_P001 | Maize | extracellular | 74.45 | 71.08 |
| TraesCS7B01G136800.1 | Wheat | plastid | 75.39 | 70.92 |
| Zm00001d052848_P004 | Maize | plastid | 75.08 | 69.79 |
| AT2G39990.1 | Thale cress | plastid | 20.5 | 22.18 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 21.14 | 21.61 |
| AT5G05780.1 | Thale cress | cytosol | 20.5 | 21.1 |
Protein Annotations
| MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | EntrezGene:835727 | UniProt:A0A178UD14 | ProteinID:AED96744.1 | EMBL:AF395063 |
| ArrayExpress:AT5G56280 | EnsemblPlantsGene:AT5G56280 | RefSeq:AT5G56280 | TAIR:AT5G56280 | RefSeq:AT5G56280-TAIR-G | EnsemblPlants:AT5G56280.1 |
| TAIR:AT5G56280.1 | EMBL:AY048692 | Unigene:At.20191 | ProteinID:BAB08872.1 | EMBL:BT004034 | EMBL:BT025877 |
| Symbol:CSN6A | GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009056 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 |
| GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030163 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom |
| InterPro:MPN | InterPro:MPN_CSN6 | RefSeq:NP_568839.1 | ProteinID:OAO91539.1 | PFAM:PF01398 | PFAM:PF13012 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 | UniProt:Q1EC57 | UniProt:Q8W206 | InterPro:Rpn11/EIF3F_C |
| SMART:SM00232 | UniParc:UPI00000AA558 | SEG:seg | : | : | : |
Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
Coordinates
chr5:-:22783384..22785605
Molecular Weight (calculated)
35660.6 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.282
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.