Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14305 | Sorghum | plastid | 88.25 | 88.25 |
| Os08t0500000-01 | Rice | plasma membrane | 86.75 | 87.54 |
| Zm00001d052848_P004 | Maize | plastid | 87.95 | 85.63 |
| TraesCS7A01G241300.1 | Wheat | plastid | 81.63 | 80.42 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 81.33 | 80.12 |
| HORVU7Hr1G049190.1 | Barley | plastid | 80.72 | 79.53 |
| TraesCS7B01G136800.1 | Wheat | plastid | 80.42 | 79.23 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 72.59 | 77.99 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 73.19 | 76.66 |
| CDY32798 | Canola | plastid | 71.69 | 75.8 |
| Solyc10g005660.2.1 | Tomato | plastid | 70.78 | 75.08 |
| CDY49389 | Canola | plastid | 71.69 | 74.84 |
| Bra002827.1-P | Field mustard | plastid | 70.78 | 74.84 |
| PGSC0003DMT400029338 | Potato | plastid | 69.88 | 74.6 |
| AT5G56280.1 | Thale cress | plastid | 71.08 | 74.45 |
| KRH62556 | Soybean | plastid | 70.78 | 73.9 |
| AT4G26430.1 | Thale cress | plastid | 68.67 | 71.92 |
| KRH56376 | Soybean | plastid | 69.58 | 71.74 |
| CDX89337 | Canola | plastid | 68.67 | 71.7 |
| Bra026439.1-P | Field mustard | plastid | 68.67 | 71.7 |
| CDX94336 | Canola | plastid | 68.07 | 71.07 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 24.4 | 70.43 |
| CDY42737 | Canola | plastid | 66.57 | 69.5 |
| Bra019106.1-P | Field mustard | plastid | 66.57 | 69.5 |
| CDX92773 | Canola | plastid | 63.86 | 60.23 |
| Zm00001d011100_P002 | Maize | plastid | 18.67 | 21.6 |
| Zm00001d035752_P002 | Maize | plastid | 18.67 | 20.33 |
| Zm00001d001966_P001 | Maize | cytosol | 19.28 | 20.06 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 19.58 | 19.64 |
Protein Annotations
| EntrezGene:100284689 | MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | UniProt:B6TWG6 | EMBL:BT060931 | EMBL:EU969331 |
| GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | InterPro:MPN_CSN6 |
| ProteinID:ONM02698.1 | PFAM:PF01398 | PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 |
| InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI0000E64913 | EnsemblPlantsGene:Zm00001d031323 | EnsemblPlants:Zm00001d031323_P001 | EnsemblPlants:Zm00001d031323_T001 |
| SEG:seg | : | : | : | : | : |
Description
COP9 signalosome complex subunit 6a
Coordinates
chr1:-:185977739..185981597
Molecular Weight (calculated)
36247.4 Da
IEP (calculated)
6.741
GRAVY (calculated)
-0.068
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPSDAAVA AAAPASTTTA AASSGGLTFK LHPLVIVNVS DHHTRVKAQA ACSGDSSSPS SSAPGAGQPP RVFGCVIGVQ RGRTVEIFNS FELVLDPVSG
101: TLDRAFLDKK QELYKKVFPD FYVLGWYSTG SDVHDTDMLI HKSLMDINES PVYLLLNPTI NLSQKDLPVT IYESELHVID GIPQLIFVRS NYTIETVEAE
201: RISVDHVAHL KPSDGGSAAT QLAAHLTGIH SAIKMLNSRV RVIHQYLVAM QKGDIPLDNS LLRQVSSLVR RLPAMESQKF QDDFLMEYND TLLMTYLAMV
301: TKCSSTMNEL VEKINTSYER TTSRRGGRGA FM
101: TLDRAFLDKK QELYKKVFPD FYVLGWYSTG SDVHDTDMLI HKSLMDINES PVYLLLNPTI NLSQKDLPVT IYESELHVID GIPQLIFVRS NYTIETVEAE
201: RISVDHVAHL KPSDGGSAAT QLAAHLTGIH SAIKMLNSRV RVIHQYLVAM QKGDIPLDNS LLRQVSSLVR RLPAMESQKF QDDFLMEYND TLLMTYLAMV
301: TKCSSTMNEL VEKINTSYER TTSRRGGRGA FM
001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM
Arabidopsis Description
CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.