Factsheet for Bra026439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012303.1-P
Bra012351.1-P
Bra024548.1-P
Bra032666.1-P
Bra033219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	Bra012303.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra032666.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra033219.1-P	AT1G02090.1	11742986
AT4G26430.1	Bra012303.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra032666.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra033219.1-P	AT1G02090.1	21798944
AT4G26430.1	Bra012351.1-P	AT1G22920.1	11742986
AT4G26430.1	Bra024548.1-P	AT1G22920.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89337	Canola	plastid	100.0	100.0
Bra019106.1-P	Field mustard	plastid	84.59	84.59
AT4G26430.1	Thale cress	plastid	82.08	82.33
Bra002827.1-P	Field mustard	plastid	77.36	78.34
VIT_19s0015g01950.t01	Wine grape	plastid	77.99	78.23
Solyc10g005660.2.1	Tomato	plastid	76.42	77.64
KRH62556	Soybean	plastid	77.36	77.36
GSMUA_Achr5P04140_001	Banana	plastid	75.16	77.35
KRH56376	Soybean	plastid	76.42	75.47
PGSC0003DMT400056930	Potato	cytosol, plastid	26.1	72.17
Os08t0500000-01	Rice	plasma membrane	72.96	70.52
EES14305	Sorghum	plastid	72.64	69.58
Zm00001d031323_P001	Maize	extracellular	71.7	68.67
TraesCS7A01G241300.1	Wheat	plastid	72.33	68.25
TraesCS7D01G240300.1	Wheat	golgi, unclear	72.33	68.25
TraesCS7B01G136800.1	Wheat	plastid	72.01	67.95
HORVU7Hr1G049190.1	Barley	plastid	72.01	67.95
Zm00001d052848_P004	Maize	plastid	71.7	66.86
Bra004995.1-P	Field mustard	plastid	21.38	23.21
Bra000157.1-P	Field mustard	plastid	21.07	22.87
Bra009133.1-P	Field mustard	cytosol	21.07	21.75
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	21.07	21.75
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	20.75	21.43
Bra017408.1-P	Field mustard	cytosol	15.09	15.58
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	13.21	14.05
Bra006369.1-P	Field mustard	cytosol	15.09	11.97

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra026439	EnsemblPlants:Bra026439.1	EnsemblPlants:Bra026439.1-P	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4ECD0	InterPro:MPN	InterPro:MPN_CSN6
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI000254718B	SEG:seg	:	:	:

Description

AT4G26430 (E=4e-152) CSN6B | CSN6B

Coordinates

chrA01:+:9301362..9303297

Molecular Weight (calculated)

35371.2 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.230

Length

318 amino acids

Sequence
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPASSCA TGNNNPSTGD ATIPQDFRVY GCVIGAQKGR TVEIFNSFEL LLDPTTDTLD RSFLEKKQEL
101: YQKVFPNFYI LGWYSTGSEA NESDMSIHKA LMDINESPVY VLLNPAINHA QKDLPVTIYE SEFHVIDGIP QPIFVNASYA IETVEAERIS VDHVAHLKPS
201: DGGSAATQLA AHLTGIHSAI KMLNSRIRVL HQYLGAMQKG DIPCDNSLLR QVASLLRSLP AAQSEKFKED FLMEYNDKLL MSYLAMITNC TSNMNEVVDK
301: FNTAYERNSR RGGRTPFM

Best Arabidopsis Sequence Match ( AT4G26430.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM

Arabidopsis Description

CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.