Factsheet for Bra032422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017345.1-P
Bra025167.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	Bra017345.1-P	AT3G25860.1	24846764
AT5G05780.1	Bra025167.1-P	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06213	Canola	cytosol	36.79	62.86
Os04t0661900-01	Rice	cytosol	23.08	40.59
Bra017408.1-P	Field mustard	cytosol	41.47	40.26
VIT_07s0005g03000.t01	Wine grape	nucleus	11.37	35.05
VIT_03s0017g00150.t01	Wine grape	nucleus	11.04	34.02
HORVU4Hr1G012380.1	Barley	cytosol	10.37	32.98
AT5G05780.1	Thale cress	cytosol	32.78	31.82
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	32.78	31.82
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	32.78	31.82
TraesCS2A01G495800.1	Wheat	golgi, unclear	32.78	31.61
HORVU2Hr1G110590.1	Barley	cytosol	32.78	31.61
TraesCS2B01G524100.2	Wheat	cytosol	32.78	31.61
TraesCS2D01G496100.2	Wheat	cytosol	32.78	31.61
Bra009133.1-P	Field mustard	cytosol	32.44	31.49
EES11600	Sorghum	cytosol	32.44	31.29
KRH31114	Soybean	endoplasmic reticulum	32.11	31.07
KRG97770	Soybean	nucleus	31.77	30.74
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	31.77	30.65
Zm00001d001966_P001	Maize	cytosol	32.44	30.41
GSMUA_Achr8P20510_001	Banana	cytosol	31.44	30.32
GSMUA_Achr9P25620_001	Banana	cytosol	31.1	29.9
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	31.77	28.7
PGSC0003DMT400042160	Potato	cytosol	29.43	28.39
Solyc01g008370.2.1	Tomato	nucleus	29.43	28.39
Bra006369.1-P	Field mustard	cytosol	33.78	25.19
KRG89488	Soybean	cytosol	15.72	17.54
Bra000157.1-P	Field mustard	plastid	16.72	17.06
Bra004995.1-P	Field mustard	plastid	16.05	16.38
Bra002827.1-P	Field mustard	plastid	14.38	13.69
Bra026439.1-P	Field mustard	plastid	14.05	13.21
Bra019106.1-P	Field mustard	plastid	14.05	13.21

Protein Annotations

Gene3D:3.30.70.330	Gene3D:3.40.140.10	MapMan:35.1	EnsemblPlantsGene:Bra032422	EnsemblPlants:Bra032422.1	EnsemblPlants:Bra032422.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	InterPro:IPR012677	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4EUE0
InterPro:MPN	InterPro:MPN_RPN7_8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF01398	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF7	InterPro:RBD_domain_sf	SMART:SM00232	SUPFAM:SSF54928	UniParc:UPI00025434C2	SEG:seg

Description

AT5G05780 (E=1e-032) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A)

Coordinates

chrA09:+:36013659..36014558

Molecular Weight (calculated)

33529.0 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.136

Length

299 amino acids

Sequence
(BLAST)

001: MTIEKVVVHP LVLRNIFHKH HCVVKNTGRR GVGVLLGWRH GGIVSVTNSY AVLFKEDSVW SFDQSHHESM LRMFERVSER DVVVGWYSTS PEPHVNNLDM
101: HAVFRKYADD PLFLTIDVMR TEMEIPTVAY LVVDEVNEVG SSKKTFFRVF TEVAPPPEEI GSSARSTLVS EMPIAGALQD TIESHYLFVK NKVRISVEGY
201: DLSLDPFDLD RSLEEHFGSC GTVEYVDVPR HPDTNAISNK CSTVTLRGEF AEEKALALSG TDVEGWTVTV KVLPPAMTEL MSGKSPRELA LEYLAARNC

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.