Factsheet for VIT_03s0017g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	VIT_01s0011g03380.t01	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03000.t01	Wine grape	nucleus	93.81	93.81
CDX70711	Canola	cytosol	31.96	24.41
VIT_08s0007g01980.t01	Wine grape	cytosol	73.2	22.9
VIT_02s0025g01490.t01	Wine grape	cytosol	69.07	21.61
AT5G05780.1	Thale cress	cytosol	67.01	21.1
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	67.01	21.1
Bra009133.1-P	Field mustard	cytosol	67.01	21.1
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	67.01	21.1
CDX70129	Canola	cytosol, nucleus, vacuole	67.01	21.1
CDY14102	Canola	cytosol	67.01	21.1
CDX80973	Canola	cytosol, nucleus, vacuole	67.01	21.1
CDY11340	Canola	extracellular	67.01	21.1
CDY04967	Canola	cytosol	67.01	21.1
CDX98863	Canola	cytosol	65.98	20.78
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	65.98	20.65
CDY17426	Canola	cytosol, nucleus, plastid	46.39	16.42
CDY04139	Canola	cytosol	47.42	16.31
Bra017408.1-P	Field mustard	cytosol	47.42	14.94
CDY06213	Canola	cytosol	21.65	12.0
CDX78706	Canola	cytosol	45.36	11.2
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	34.02	11.04
Bra006369.1-P	Field mustard	cytosol	42.27	10.22
VIT_19s0015g01950.t01	Wine grape	plastid	27.84	8.52
VIT_13s0019g03470.t01	Wine grape	cytosol	24.74	8.42

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	ProteinID:CCB57969	ProteinID:CCB57969.1	UniProt:F6HTF9	EMBL:FN596248
GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:JAMM/MPN+_dom	InterPro:MPN_RPN7_8	PFAM:PF01398	PANTHER:PTHR10540
PANTHER:PTHR10540:SF7	UniParc:UPI00021088A2	ArrayExpress:VIT_03s0017g00150	EnsemblPlantsGene:VIT_03s0017g00150	EnsemblPlants:VIT_03s0017g00150.t01	:

Description

No Description!

Coordinates

chr3:-:14324591..14324884

Molecular Weight (calculated)

10927.8 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.507

Length

97 amino acids

Sequence
(BLAST)

1: MKDPSMWFLD HNYHEPMFST FKGINAKEHV VGWYSTGPTL QENDLDIPGL FHDYAPNPVL VIIDVQPKEI GIPTKAYYAV EEVKESATQK SQNGSSS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.