Factsheet for VIT_19s0015g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_12s0035g01450.t01
VIT_14s0171g00270.t01
VIT_15s0021g01580.t01
VIT_18s0001g12250.t01
VIT_19s0015g01950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	VIT_15s0021g01580.t01	AT1G02090.1	11742986
AT4G26430.1	VIT_15s0021g01580.t01	AT1G02090.1	21798944
AT4G26430.1	VIT_03s0038g04360.t01	AT1G22920.1	11742986
AT4G26430.1	VIT_03s0038g04360.t01	AT1G71230.1	11742986
AT5G56280.1	VIT_15s0021g01580.t01	AT1G02090.1	11701877
AT5G56280.1	VIT_15s0021g01580.t01	AT1G02090.1	11742986
AT5G56280.1	VIT_15s0021g01580.t01	AT1G02090.1	12615944
AT5G56280.1	VIT_03s0038g04360.t01	AT1G22920.1	11701877
AT5G56280.1	VIT_03s0038g04360.t01	AT1G22920.1	11742986
AT5G56280.1	VIT_03s0038g04360.t01	AT1G22920.1	12615944
AT5G56280.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT5G56280.1	VIT_03s0038g04360.t01	AT1G71230.1	11742986
AT5G56280.1	VIT_14s0171g00270.t01	AT5G14250.1	11701877
AT5G56280.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT5G56280.1	VIT_12s0035g01450.t01	AT5G42970.1	11701877
AT5G56280.1	VIT_18s0001g12250.t01	AT5G42970.1	11701877
AT5G56280.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT5G56280.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944
AT5G56280.1	VIT_19s0015g01950.t01	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029338	Potato	plastid	87.38	89.07
Solyc10g005660.2.1	Tomato	plastid	87.38	88.5
KRH62556	Soybean	plastid	86.12	85.85
GSMUA_Achr5P04140_001	Banana	plastid	83.6	85.76
KRH56376	Soybean	plastid	86.44	85.09
AT5G56280.1	Thale cress	plastid	82.65	82.65
CDY32798	Canola	plastid	80.44	81.21
CDY49389	Canola	plastid	81.39	81.13
Bra002827.1-P	Field mustard	plastid	80.13	80.89
AT4G26430.1	Thale cress	plastid	80.13	80.13
CDX94336	Canola	plastid	79.81	79.56
CDX89337	Canola	plastid	78.23	77.99
Bra026439.1-P	Field mustard	plastid	78.23	77.99
Bra019106.1-P	Field mustard	plastid	77.6	77.36
CDY42737	Canola	plastid	77.6	77.36
Os08t0500000-01	Rice	plasma membrane	77.92	75.08
EES14305	Sorghum	plastid	77.6	74.1
TraesCS7A01G241300.1	Wheat	plastid	78.23	73.59
TraesCS7D01G240300.1	Wheat	golgi, unclear	78.23	73.59
HORVU7Hr1G049190.1	Barley	plastid	77.92	73.29
Zm00001d031323_P001	Maize	extracellular	76.66	73.19
TraesCS7B01G136800.1	Wheat	plastid	77.6	73.0
Zm00001d052848_P004	Maize	plastid	76.66	71.26
CDX92773	Canola	plastid	73.82	66.48
VIT_03s0017g00150.t01	Wine grape	nucleus	8.52	27.84
VIT_07s0005g03000.t01	Wine grape	nucleus	8.2	26.8
VIT_13s0019g03470.t01	Wine grape	cytosol	21.45	23.86
VIT_02s0025g01490.t01	Wine grape	cytosol	21.14	21.61
VIT_08s0007g01980.t01	Wine grape	cytosol	21.14	21.61

Protein Annotations

EntrezGene:100246357	wikigene:100246357	MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EMBL:AM461637	ProteinID:CAN70239
ProteinID:CAN70239.1	ProteinID:CBI39873	ProteinID:CBI39873.3	UniProt:D7UAV8	EMBL:FN596747	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EntrezGene:LOC100246357	wikigene:LOC100246357	InterPro:MPN
InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8
InterPro:Rpn11/EIF3F_C	SMART:SM00232	TIGR:TC62791	UniParc:UPI00019859DA	ArrayExpress:VIT_19s0015g01950	EnsemblPlantsGene:VIT_19s0015g01950
EnsemblPlants:VIT_19s0015g01950.t01	unigene:Vvi.778	RefSeq:XP_002267156	RefSeq:XP_002267156.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:10934550..10947138

Molecular Weight (calculated)

35340.2 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.194

Length

317 amino acids

Sequence
(BLAST)

001: MASSSSSGLT FKLHPLVIVN ISDHYTRVKS QTQPPHLSSN GGEGAAAAAS PPPPPPRVFG CVIGVQRGRT VEIFNSFELL YDPSTHSLDR SFLEKKQELY
101: KKVFPNFYIL GWYSTGSDAQ ESDMHIHKAL MDINESPVYV LLNPSINHAQ KDLPVTIYES ELHVIDGIPQ LIFVRANYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLH HYLLAMQKGD IPCENSLLRQ VSSLLRRLPA IESGKFQDDF LMEYNDTLLI SYLAMFTNCS STMNELVDKF
301: NTAYDRHSRR GGRTAFI

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.