Factsheet for VIT_07s0005g03000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	VIT_01s0011g03380.t01	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00150.t01	Wine grape	nucleus	93.81	93.81
CDX70711	Canola	cytosol	30.93	23.62
VIT_08s0007g01980.t01	Wine grape	cytosol	75.26	23.55
VIT_02s0025g01490.t01	Wine grape	cytosol	71.13	22.26
AT5G05780.1	Thale cress	cytosol	69.07	21.75
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	69.07	21.75
Bra009133.1-P	Field mustard	cytosol	69.07	21.75
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	69.07	21.75
CDX70129	Canola	cytosol, nucleus, vacuole	69.07	21.75
CDY14102	Canola	cytosol	69.07	21.75
CDX80973	Canola	cytosol, nucleus, vacuole	69.07	21.75
CDY11340	Canola	extracellular	69.07	21.75
CDY04967	Canola	cytosol	69.07	21.75
CDX98863	Canola	cytosol	68.04	21.43
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	68.04	21.29
CDY17426	Canola	cytosol, nucleus, plastid	46.39	16.42
CDY04139	Canola	cytosol	47.42	16.31
Bra017408.1-P	Field mustard	cytosol	47.42	14.94
CDY06213	Canola	cytosol	22.68	12.57
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	35.05	11.37
CDX78706	Canola	cytosol	44.33	10.94
Bra006369.1-P	Field mustard	cytosol	41.24	9.98
VIT_13s0019g03470.t01	Wine grape	cytosol	24.74	8.42
VIT_19s0015g01950.t01	Wine grape	plastid	26.8	8.2

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	ProteinID:CCB60091	ProteinID:CCB60091.1	UniProt:F6HZH6	EMBL:FN596502
GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:JAMM/MPN+_dom	InterPro:MPN_RPN7_8	PFAM:PF01398	PANTHER:PTHR10540
PANTHER:PTHR10540:SF7	UniParc:UPI000210A2B5	ArrayExpress:VIT_07s0005g03000	EnsemblPlantsGene:VIT_07s0005g03000	EnsemblPlants:VIT_07s0005g03000.t01	:

Description

No Description!

Coordinates

chr7:-:5817249..5817542

Molecular Weight (calculated)

11096.0 Da

IEP (calculated)

5.485

GRAVY (calculated)

-0.616

Length

97 amino acids

Sequence
(BLAST)

1: MKDPSMWFPD HNYHESMFST FKRINAKEHV VGWYNTGPTL QENDLDIHGL FHDYVPNPVL VIIDVQPKEI GIPTKAYYAV EEVKESATQK SQNGSSS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.