Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | CDX83563 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY04184 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY13593 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY39183 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04139 | Canola | cytosol | 63.14 | 61.35 |
| Os04t0661900-01 | Rice | cytosol | 35.4 | 57.06 |
| VIT_03s0017g00150.t01 | Wine grape | nucleus | 16.42 | 46.39 |
| VIT_07s0005g03000.t01 | Wine grape | nucleus | 16.42 | 46.39 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 15.69 | 45.74 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 46.72 | 41.56 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 46.72 | 41.56 |
| CDY04967 | Canola | cytosol | 46.72 | 41.56 |
| CDY11340 | Canola | extracellular | 46.72 | 41.56 |
| CDY14102 | Canola | cytosol | 46.72 | 41.56 |
| AT5G05780.1 | Thale cress | cytosol | 46.72 | 41.56 |
| CDX98863 | Canola | cytosol | 45.99 | 40.91 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 45.26 | 40.0 |
| KRG97770 | Soybean | nucleus | 44.53 | 39.48 |
| KRH31114 | Soybean | endoplasmic reticulum | 44.53 | 39.48 |
| EES11600 | Sorghum | cytosol | 44.16 | 39.03 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 44.16 | 39.03 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 44.16 | 39.03 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 44.16 | 39.03 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 44.16 | 39.03 |
| CDY06213 | Canola | cytosol | 24.82 | 38.86 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 43.07 | 37.94 |
| Zm00001d001966_P001 | Maize | cytosol | 44.16 | 37.93 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 42.7 | 37.74 |
| CDX70711 | Canola | cytosol | 17.15 | 37.01 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 44.16 | 36.56 |
| PGSC0003DMT400042160 | Potato | cytosol | 41.24 | 36.45 |
| Solyc01g008370.2.1 | Tomato | nucleus | 41.24 | 36.45 |
| CDX78706 | Canola | cytosol | 35.04 | 24.43 |
| CDX74814 | Canola | cytosol, plastid | 22.99 | 21.8 |
| CDY65775 | Canola | cytosol, plastid | 22.63 | 21.45 |
| CDY24934 | Canola | plastid | 22.63 | 21.16 |
| CDY60991 | Canola | plastid | 22.26 | 20.82 |
| KRG89488 | Soybean | cytosol | 20.07 | 20.52 |
| CDY32798 | Canola | plastid | 17.15 | 14.97 |
| CDY49389 | Canola | plastid | 17.15 | 14.78 |
| CDY42737 | Canola | plastid | 16.79 | 14.47 |
| CDX94336 | Canola | plastid | 16.42 | 14.15 |
| CDX89337 | Canola | plastid | 16.42 | 14.15 |
| CDX92773 | Canola | plastid | 17.88 | 13.92 |
Protein Annotations
| Gene3D:3.40.140.10 | MapMan:35.1 | UniProt:A0A078FWS3 | EnsemblPlants:CDY17426 | ProteinID:CDY17426 | ProteinID:CDY17426.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005838 | EnsemblPlantsGene:GSBRNA2T00095559001 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | InterPro:MPN_RPN7_8 |
| PFAM:PF01398 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 | SMART:SM00232 | UniParc:UPI0004EEC02D |
Description
BnaC09g21110DBnaC09g21110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWS3]
Coordinates
chrLK032073:+:172232..173824
Molecular Weight (calculated)
29565.2 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.057
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTQSASRI EKVVVHPLVL RNIVDNHNRI AKDSGKRVVG VLLGSRSSRG IVGVTNSYAV PFEEDGKDPS IWSFDGDHHE YMLNMFNGLN DKEDVVGWYS
101: TCPNLRENDL AVHASIFRSC SYVLNPVVLV TIDVQPHQLG IPTKAYYAVN SSLGSSKEAF VPVSTEIAPP QVEEIGRSIL VTEMTPGGDN GLSCGFLENI
201: QVPRHPVTNA ITDRCTTVTL SGEGATEKAL ALNGSDVGGW IVSVTLLPPE ISEMASGMSA REYALRYVAG TLSM
101: TCPNLRENDL AVHASIFRSC SYVLNPVVLV TIDVQPHQLG IPTKAYYAVN SSLGSSKEAF VPVSTEIAPP QVEEIGRSIL VTEMTPGGDN GLSCGFLENI
201: QVPRHPVTNA ITDRCTTVTL SGEGATEKAL ALNGSDVGGW IVSVTLLPPE ISEMASGMSA REYALRYVAG TLSM
001: MDVIKTQQIS ARTIEKVIVH PLVLLSIVDH YNRVAKDTSK RVVGVLLGSS SRGTVDVTNS YAVPFEEDDK DTSIWFLDHN YHESMFHMFK RINAKEHIVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES
Arabidopsis Description
RPN8B26S proteasome non-ATPase regulatory subunit 7 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9C774]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.