CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90801
KRH75381

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	KRG90801	AT3G25860.1	24846764
AT5G05780.1	KRH75381	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31114	Soybean	endoplasmic reticulum	97.73	97.73
VIT_08s0007g01980.t01	Wine grape	cytosol	93.53	93.23
VIT_02s0025g01490.t01	Wine grape	cytosol	90.94	90.65
CDY11340	Canola	extracellular	89.64	89.94
Solyc01g008370.2.1	Tomato	nucleus	89.97	89.68
PGSC0003DMT400042160	Potato	cytosol	89.97	89.68
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	89.32	89.61
Bra009133.1-P	Field mustard	cytosol	89.32	89.61
CDX80973	Canola	cytosol, nucleus, vacuole	89.32	89.61
GSMUA_Achr8P20510_001	Banana	cytosol	89.64	89.35
AT5G05780.1	Thale cress	cytosol	89.0	89.29
CDX70129	Canola	cytosol, nucleus, vacuole	89.0	89.29
CDY14102	Canola	cytosol	89.0	89.29
CDY04967	Canola	cytosol	89.0	89.29
GSMUA_Achr9P25620_001	Banana	cytosol	89.64	89.07
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	88.67	88.96
CDX98863	Canola	cytosol	88.35	88.64
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	88.67	88.39
EES11600	Sorghum	cytosol	88.35	88.06
HORVU2Hr1G110590.1	Barley	cytosol	88.35	88.06
TraesCS2D01G496100.2	Wheat	cytosol	88.03	87.74
TraesCS2B01G524100.2	Wheat	cytosol	88.03	87.74
TraesCS2A01G495800.1	Wheat	golgi, unclear	88.03	87.74
Zm00001d001966_P001	Maize	cytosol	88.35	85.58
Os04t0661900-01	Rice	cytosol	43.69	79.41
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	84.47	78.85
HORVU4Hr1G012380.1	Barley	cytosol	19.42	63.83
KRG89488	Soybean	cytosol	45.95	52.99
CDY17426	Canola	cytosol, nucleus, plastid	39.48	44.53
CDY04139	Canola	cytosol	40.45	44.33
Bra017408.1-P	Field mustard	cytosol	41.42	41.56
CDX70711	Canola	cytosol	16.18	39.37
CDY06213	Canola	cytosol	19.74	34.86
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	30.74	31.77
KRH14986	Soybean	endoplasmic reticulum	28.16	30.1
KRH73154	Soybean	endoplasmic reticulum	27.51	29.41
Bra006369.1-P	Field mustard	cytosol	36.57	28.18
KRG97767	Soybean	endoplasmic reticulum	26.21	28.03
KRH31118	Soybean	endoplasmic reticulum	25.89	27.78
CDX78706	Canola	cytosol	35.28	27.74
KRH62556	Soybean	plastid	22.65	22.01
KRH56376	Soybean	plastid	22.33	21.43

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	EMBL:ACUP02010814	EnsemblPlantsGene:GLYMA_18G029800	GO:GO:0000502	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0043161	UniProt:I1MZ47	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRG97770
ProteinID:KRG97770	ProteinID:KRG97770.1	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI000233E872

Description

hypothetical protein

Coordinates

chr18:+:2254490..2258286

Molecular Weight (calculated)

34759.0 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.098

Length

309 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS SRPIEKVVVH PLVLLSIVDN YNRVAKDTRK RVVGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLRE NDLDIHGLFN DYVPNPVLVI IDVEPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVS
201: AKLTALKGLD ARLKEIRGYL DLVIDGKLPL NHEILYHLQD VFNLLPNLNV ADLIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHERAEDSK
301: SVTVPGAAA

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.