Factsheet for Solyc01g008370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009530.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05780.1	Solyc05g009530.2.1	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042160	Potato	cytosol	99.35	99.35
VIT_08s0007g01980.t01	Wine grape	cytosol	92.58	92.58
KRH31114	Soybean	endoplasmic reticulum	90.65	90.94
GSMUA_Achr9P25620_001	Banana	cytosol	90.32	90.03
VIT_02s0025g01490.t01	Wine grape	cytosol	90.0	90.0
GSMUA_Achr8P20510_001	Banana	cytosol	90.0	90.0
KRG97770	Soybean	nucleus	89.68	89.97
EES11600	Sorghum	cytosol	89.03	89.03
CDY11340	Canola	extracellular	88.06	88.64
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	87.74	88.31
CDX80973	Canola	cytosol, nucleus, vacuole	87.74	88.31
AT5G05780.1	Thale cress	cytosol	87.42	87.99
CDY14102	Canola	cytosol	87.42	87.99
CDY04967	Canola	cytosol	87.42	87.99
CDX70129	Canola	cytosol, nucleus, vacuole	87.42	87.99
TraesCS2A01G495800.1	Wheat	golgi, unclear	87.74	87.74
TraesCS2B01G524100.2	Wheat	cytosol	87.74	87.74
TraesCS2D01G496100.2	Wheat	cytosol	87.74	87.74
HORVU2Hr1G110590.1	Barley	cytosol	87.74	87.74
CDX98863	Canola	cytosol	87.1	87.66
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	87.1	87.66
Bra009133.1-P	Field mustard	cytosol	86.77	87.34
AT3G11270.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	87.1	87.1
Zm00001d001966_P001	Maize	cytosol	89.03	86.52
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	83.55	78.25
Os04t0661900-01	Rice	cytosol	42.58	77.65
HORVU4Hr1G012380.1	Barley	cytosol	17.74	58.51
KRG89488	Soybean	cytosol	42.26	48.88
CDY17426	Canola	cytosol, nucleus, plastid	36.45	41.24
CDY04139	Canola	cytosol	36.45	40.07
CDX70711	Canola	cytosol	15.81	38.58
Bra017408.1-P	Field mustard	cytosol	37.74	37.99
CDY06213	Canola	cytosol	18.39	32.57
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	28.39	29.43
Solyc11g013440.1.1	Tomato	plastid	26.13	28.42
CDX78706	Canola	cytosol	33.87	26.72
Bra006369.1-P	Field mustard	cytosol	34.52	26.68
Solyc05g052690.2.1	Tomato	cytosol	24.19	26.32
Solyc10g005660.2.1	Tomato	plastid	21.94	21.73

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
UniProt:K4AT35	MEROPS:M67.973	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232	EnsemblPlantsGene:Solyc01g008370.2
EnsemblPlants:Solyc01g008370.2.1	UniParc:UPI0002762F26	:	:	:	:

Description

No Description!

Coordinates

chr1:-:2477506..2483463

Molecular Weight (calculated)

35067.3 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.147

Length

310 amino acids

Sequence
(BLAST)

001: MDVIKSQQIS SRPIEKVIVH PLVLLSIVDH YNRVARDTRK RVVGVLLGTS FKGTVDVTNS YAVPFEEEER DPSIWFLDHN YHESMFSMFR RINAKEHVVG
101: WYSTGPKLRE NDLNIHGLFN DYVPTPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ NVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLAALKGLD ARLQEIRSYL DLVIDGKLPL NHEILYHLQD VFNLLPNLNV AELVKSFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDSK
301: PRAVPTTAGS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.