Factsheet for Solyc05g009530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g010290.1.1
Solyc07g066370.2.1
Solyc11g017250.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	Solyc11g017250.1.1	AT1G34430.1	21798944
AT3G25860.1	Solyc07g066370.2.1	AT1G79070.1	21798944
AT3G25860.1	Solyc05g010290.1.1	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033754	Potato	plastid	97.17	96.96
GSMUA_Achr3P07350_001	Banana	cytosol	69.06	77.89
VIT_01s0011g03380.t01	Wine grape	plastid	77.34	72.75
AT3G25860.1	Thale cress	plastid	76.03	72.71
CDX83563	Canola	plastid	75.16	72.48
KRH75381	Soybean	plastid	67.1	72.13
Bra025167.1-P	Field mustard	plastid	74.95	72.12
CDY13593	Canola	plastid	74.95	72.12
CDY39183	Canola	plastid	73.86	71.82
Bra017345.1-P	Field mustard	plastid	74.29	71.19
CDY04184	Canola	plastid	74.29	71.19
Zm00001d032224_P001	Maize	plastid	69.06	67.3
KRG90801	Soybean	endoplasmic reticulum, nucleus	74.07	67.19
EES15031	Sorghum	plastid	68.41	66.11
TraesCS5A01G476700.1	Wheat	plastid	68.19	66.03
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	67.97	65.82
TraesCS5B01G489600.1	Wheat	golgi	67.76	65.47
Os08t0431300-01	Rice	plastid	67.76	65.47
OQU89472	Sorghum	plastid	64.71	64.71
TraesCS3B01G372900.1	Wheat	plastid	63.83	64.54
Zm00001d020426_P001	Maize	plastid	63.62	64.32
TraesCS5D01G212800.1	Wheat	plastid	64.71	64.15
HORVU5Hr1G061140.1	Barley	plastid	64.49	63.93
TraesCS5B01G204800.1	Wheat	plastid	64.27	63.71
Solyc11g017250.1.1	Tomato	plastid	62.75	61.54
Os09t0408600-01	Rice	plastid	65.8	60.28
Zm00001d050383_P001	Maize	plastid	68.41	60.15
TraesCS5A01G206600.2	Wheat	plastid	59.04	58.41
HORVU5Hr1G112850.3	Barley	plastid	65.14	55.78
Solyc07g006790.2.1	Tomato	plastid	32.68	27.12
Solyc12g005080.1.1	Tomato	nucleus	17.86	22.16
Solyc01g066520.2.1	Tomato	plastid	23.75	21.58
Solyc11g007720.1.1	Tomato	nucleus, unclear	28.54	20.34
Solyc07g064800.2.1	Tomato	extracellular, nucleus	17.86	17.52

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0022626
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:K4BXC7	PFAM:PF00198
PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD
PANTHER:PTHR23151	PANTHER:PTHR23151:SF75	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
EnsemblPlantsGene:Solyc05g009530.2	EnsemblPlants:Solyc05g009530.2.1	UniParc:UPI0002766A75	SEG:seg	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G25860) UniProtKB/Swiss-Prot;Acc:Q9SQI8]

Coordinates

chr5:-:3737122..3743261

Molecular Weight (calculated)

48229.2 Da

IEP (calculated)

8.790

GRAVY (calculated)

-0.008

Length

459 amino acids

Sequence
(BLAST)

001: MASLQSSAIS FSSSLGRFSS TRTMLPQKPR KYKLPVVESK IREIFMPALS STMTEGKIVS WVKSEGDVLS KGESVVVVES DKADMDVETF YDGILAVIVV
101: NEGETALVGA PIGLLAETED EIAEAKAKAK GQSGGSSSGS ESTPEPQSPV VVSSDEPKKI VATPNAKKLA KQHKIDINKV KGTGPFGRIT SEDVEKAAGI
201: TPAPSKSISP PPPPPAAAPA AGAPAKAAPV SLPEIPGSTV VPFTTMQVAV SKNMVESLSV PTFRVGYPVI TDALDALYLK VKKKGVTMTA LLAKAAAMAL
301: AQHPVVNSSC KDGKSFTYNS SINIAVAVAI NGGLITPVLQ DADKLDLYLL SQKWKELVEK ARAKQLQPHE YNSGTFTLSN LGMFGVDRFD AILPPGQGAI
401: MAVGASKPTP VADADGFFSV KNKMLVNVTA DHRVVYGADL AAFLQTFSKI IENPDSLTM

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.