Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25545.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
| AT3G25545.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064666 | Potato | cytosol, plastid | 95.56 | 95.56 |
| Bra026521.1-P | Field mustard | cytosol | 57.41 | 57.84 |
| CDY46498 | Canola | nucleus | 57.41 | 57.62 |
| AT3G25545.1 | Thale cress | cytosol | 56.67 | 57.3 |
| CDX99773 | Canola | cytosol | 55.93 | 55.93 |
| VIT_09s0002g08050.t01 | Wine grape | cytosol | 25.93 | 54.26 |
| CDY33125 | Canola | cytosol | 35.93 | 51.32 |
| KRH71066 | Soybean | cytosol | 45.93 | 49.21 |
| VIT_01s0010g01100.t01 | Wine grape | cytosol, nucleus, plasma membrane | 64.81 | 44.42 |
| Os01t0219000-00 | Rice | peroxisome | 31.48 | 34.41 |
| KXG31546 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 30.0 | 33.75 |
| Zm00001d039354_P001 | Maize | extracellular | 28.89 | 32.77 |
| TraesCS3A01G143400.1 | Wheat | cytosol | 28.52 | 32.22 |
| TraesCS3B01G161700.1 | Wheat | cytosol | 27.78 | 31.38 |
| TraesCS3D01G144200.1 | Wheat | cytosol | 27.78 | 31.38 |
| HORVU3Hr1G027540.1 | Barley | cytosol | 27.41 | 30.96 |
Protein Annotations
| EnsemblPlants:Solyc05g010290.1.1 | EnsemblPlantsGene:Solyc05g010290.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043248 |
| InterPro:Proteasome_assmbl_chp_1 | PANTHER:PTHR37227 | PFAM:PF16094 | SEG:seg | UniParc:UPI000276700D | UniProt:K4BXK2 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:4453322..4454134
Molecular Weight (calculated)
29904.3 Da
IEP (calculated)
6.361
GRAVY (calculated)
-0.003
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDILTEIPP PSRFFLEDLN NFCPPSPPLP SPFLLFSTPN QEKFSRPSLL IIAMSSSSLQ VFHHVSSKTL VGTVILPEIP FSGNSVEPSL KDKSCNIYAL
101: NEDDNLIMIV CVQYQVTAER SHAVAKLLIG EQVIPEKVLI LDSIRSSNYR GRLSPDEAFA FKLESSAERK AKADGHQDSP LVKCADYLPS GSVVDGLAAA
201: LLSRCQLKKI RGTLCVSWPE VGVSVTSLVK SLLLKDVLSR VKHIDMKKLE EEFLKLGRSK DFLLESELYT
101: NEDDNLIMIV CVQYQVTAER SHAVAKLLIG EQVIPEKVLI LDSIRSSNYR GRLSPDEAFA FKLESSAERK AKADGHQDSP LVKCADYLPS GSVVDGLAAA
201: LLSRCQLKKI RGTLCVSWPE VGVSVTSLVK SLLLKDVLSR VKHIDMKKLE EEFLKLGRSK DFLLESELYT
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
Arabidopsis Description
AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.