Factsheet for VIT_01s0010g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25545.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08050.t01	Wine grape	cytosol	29.7	90.7
PGSC0003DMT400064666	Potato	cytosol, plastid	44.42	64.81
Solyc05g010290.1.1	Tomato	cytosol	44.42	64.81
Bra026521.1-P	Field mustard	cytosol	41.12	60.45
CDY46498	Canola	nucleus	40.86	59.85
AT3G25545.1	Thale cress	cytosol	39.34	58.05
CDX99773	Canola	cytosol	39.34	57.41
CDY33125	Canola	cytosol	25.38	52.91
KRH71066	Soybean	cytosol	31.98	50.0
KXG31546	Sorghum	cytosol, endoplasmic reticulum, peroxisome	20.56	33.75
Os01t0219000-00	Rice	peroxisome	21.07	33.6
Zm00001d039354_P001	Maize	extracellular	20.05	33.19
TraesCS3A01G143400.1	Wheat	cytosol	19.54	32.22
TraesCS3B01G161700.1	Wheat	cytosol	19.54	32.22
HORVU3Hr1G027540.1	Barley	cytosol	19.04	31.38
TraesCS3D01G144200.1	Wheat	cytosol	19.04	31.38

Protein Annotations

ArrayExpress:VIT_01s0010g01100	EMBL:FN595754	EnsemblPlants:VIT_01s0010g01100.t01	EnsemblPlantsGene:VIT_01s0010g01100	EntrezGene:100256430	EntrezGene:LOC100256430
PANTHER:PTHR37227	ProteinID:CCB51172	ProteinID:CCB51172.1	RefSeq:XP_002270731	RefSeq:XP_002270731.1	SEG:seg
TIGR:TC63056	UniParc:UPI00021092D9	UniProt:F6HGH1	wikigene:100256430	wikigene:LOC100256430	MapMan:35.2

Description

No Description!

Coordinates

chr1:-:16686010..16690231

Molecular Weight (calculated)

44171.3 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.059

Length

394 amino acids

Sequence
(BLAST)

001: MIKIVTENSC DTANSILCFY ISNKKKYHFN ILELNYVDCL RFKIKAKNKN KNKRRKVKWA FTCEVTFRAR KTAPLAAFIT SVLDFLFSLR LFKFLCLDTW
101: VLGGSFGVWI SEPETLAFVA EHRSRRNMED VLTEIPPPSR FFKEDLNNFT PPSPPLPSPF LLFSSLDKPL RSSLLIIAIS SPSLSVFHHV ATKTLIGTLI
201: LPEIPLSGNS IEPSVRDKSC NIYALNDVYN SVLLVSVQYS VSAERSHAIA KLLIGEQIIP ERVLIMDSVQ SRNFRGKLSP DETFAFKLET SSERKEHSDG
301: SSSSPLLKGL DYFPSGSMVD GLAAALLSQC QMRNIKGTLC VSWPEFGGSG VSLVKSIIKE VLPSLEFSVN SDGEDEYSKL DQIKDHPFDS ELYT

Best Arabidopsis Sequence Match ( AT3G25545.1 )
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT

Arabidopsis Description

AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.