CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25545.1	CDY04768	AT1G22920.1	21798944
AT3G25545.1	CDY21400	AT1G22920.1	21798944
AT3G25545.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026521.1-P	Field mustard	cytosol	95.17	95.52
CDX99773	Canola	cytosol	91.08	90.74
AT3G25545.1	Thale cress	cytosol	81.41	82.02
CDY33125	Canola	cytosol	54.28	77.25
PGSC0003DMT400064666	Potato	cytosol, plastid	58.74	58.52
Solyc05g010290.1.1	Tomato	cytosol	57.62	57.41
VIT_09s0002g08050.t01	Wine grape	cytosol	24.16	50.39
KRH71066	Soybean	cytosol	45.35	48.41
VIT_01s0010g01100.t01	Wine grape	cytosol, nucleus, plasma membrane	59.85	40.86
Os01t0219000-00	Rice	peroxisome	30.11	32.79
TraesCS3B01G161700.1	Wheat	cytosol	28.62	32.22
TraesCS3A01G143400.1	Wheat	cytosol	28.25	31.8
HORVU3Hr1G027540.1	Barley	cytosol	27.88	31.38
TraesCS3D01G144200.1	Wheat	cytosol	27.51	30.96
KXG31546	Sorghum	cytosol, endoplasmic reticulum, peroxisome	27.51	30.83
Zm00001d039354_P001	Maize	extracellular	26.77	30.25

Protein Annotations

EnsemblPlants:CDY46498	EnsemblPlantsGene:GSBRNA2T00084099001	PANTHER:PTHR37227	ProteinID:CDY46498	ProteinID:CDY46498.1	SEG:seg
UniParc:UPI0004EE21B1	UniProt:A0A078IB65	MapMan:35.2	:	:	:

Description

BnaA02g27480DBnaA02g27480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB65]

Coordinates

chrLK032671:+:55718..57112

Molecular Weight (calculated)

29412.3 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.051

Length

269 amino acids

Sequence
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFASPPPEPP LPSPFILFSS PKPELPLKPS LLIIALSSPS LHIFHSCLPS KTLIGTLIIP ELPFSGNTVE PSLQDKSCNI
101: YSLSDNNNEN SVLLISVQLP VSPERSNLVS RLLIGQDIVP ERVIILDSIQ SRNFRGRLSP DEALAAKLET SSEKKAAATS RMNLDYFPSG SVIDGLSASL
201: LSRCQLKNIR GTLVVSWPEF DPSVVRFVGG LLKNIVPGLD IASVGKDLEM YSSRSGLKKD AWLDSDLYT

Best Arabidopsis Sequence Match ( AT3G25545.1 )
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT

Arabidopsis Description

AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.