CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25545.1	KRH52586	AT1G22920.1	21798944
AT3G25545.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08050.t01	Wine grape	cytosol	24.21	47.29
Bra026521.1-P	Field mustard	cytosol	49.21	46.27
CDX99773	Canola	cytosol	49.21	45.93
Solyc05g010290.1.1	Tomato	cytosol	49.21	45.93
PGSC0003DMT400064666	Potato	cytosol, plastid	48.81	45.56
CDY46498	Canola	nucleus	48.41	45.35
AT3G25545.1	Thale cress	cytosol	46.43	43.82
CDY33125	Canola	cytosol	29.37	39.15
Os01t0219000-00	Rice	peroxisome	37.7	38.46
Zm00001d039354_P001	Maize	extracellular	36.11	38.24
KXG31546	Sorghum	cytosol, endoplasmic reticulum, peroxisome	36.11	37.92
TraesCS3D01G144200.1	Wheat	cytosol	34.92	36.82
TraesCS3A01G143400.1	Wheat	cytosol	34.52	36.4
TraesCS3B01G161700.1	Wheat	cytosol	34.52	36.4
HORVU3Hr1G027540.1	Barley	cytosol	34.13	35.98
VIT_01s0010g01100.t01	Wine grape	cytosol, nucleus, plasma membrane	50.0	31.98

Protein Annotations

EMBL:ACUP02000852	EnsemblPlants:KRH71066	EnsemblPlantsGene:GLYMA_02G127200	EntrezGene:100789132	PANTHER:PTHR37227	ProteinID:KRH71066
ProteinID:KRH71066.1	SEG:seg	UniParc:UPI0002336B10	UniProt:I1JEN8	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:12827179..12828512

Molecular Weight (calculated)

27563.6 Da

IEP (calculated)

5.950

GRAVY (calculated)

0.163

Length

252 amino acids

Sequence
(BLAST)

001: MEDVITEAAP PSRFLEEDLN IFTPPSPPLP KPFLIFPHNK QTLKPSLLII ALSPSSLALF NQTLTLTLTP LASLILPELP LSLPDHNVSI LPLSPDTLLA
101: PVPFPVPSHR AHAVARALLS IRPDSVLVLD SLDPTNFRGK LSSDDAVAFK LETSAEMKRA HDEKLLGEEL DYYPSGSVVD GLGAAILARC QLMNIRASLC
201: VSWPRFDKSV VALIKGLLGR RVLPGFEFGL SDDEVLKIGR SRDRVVHSEL YI

Best Arabidopsis Sequence Match ( AT3G25545.1 )
(BLAST)

001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT

Arabidopsis Description

AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.