Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012351.1-P | |
| Bra024548.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25545.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT3G25545.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46498 | Canola | nucleus | 95.52 | 95.17 |
| CDX99773 | Canola | cytosol | 91.79 | 91.11 |
| AT3G25545.1 | Thale cress | cytosol | 82.09 | 82.4 |
| PGSC0003DMT400064666 | Potato | cytosol, plastid | 58.96 | 58.52 |
| Solyc05g010290.1.1 | Tomato | cytosol | 57.84 | 57.41 |
| VIT_09s0002g08050.t01 | Wine grape | cytosol | 24.25 | 50.39 |
| KRH71066 | Soybean | cytosol | 46.27 | 49.21 |
| VIT_01s0010g01100.t01 | Wine grape | cytosol, nucleus, plasma membrane | 60.45 | 41.12 |
| TraesCS3B01G161700.1 | Wheat | cytosol | 29.48 | 33.05 |
| Os01t0219000-00 | Rice | peroxisome | 29.85 | 32.39 |
| HORVU3Hr1G027540.1 | Barley | cytosol | 28.73 | 32.22 |
| TraesCS3A01G143400.1 | Wheat | cytosol | 28.73 | 32.22 |
| TraesCS3D01G144200.1 | Wheat | cytosol | 27.99 | 31.38 |
| KXG31546 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 27.61 | 30.83 |
| Zm00001d039354_P001 | Maize | extracellular | 26.87 | 30.25 |
Protein Annotations
| EnsemblPlants:Bra026521.1 | EnsemblPlants:Bra026521.1-P | EnsemblPlantsGene:Bra026521 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | PANTHER:PTHR37227 | SEG:seg | UniParc:UPI00025464DE | UniProt:M4ECL1 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT3G25545 (E=9e-092) | unknown protein
Coordinates
chrA02:-:19893294..19894100
Molecular Weight (calculated)
29385.3 Da
IEP (calculated)
5.398
GRAVY (calculated)
-0.079
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVLTENPP PSRFFQEDLN NFTPSPEPPL PSPFIVFSNP KPELPLKPSL LIIALSSPSL HIFHSCLPSK TLIGTLIIPE LPFSGNTVEP SLQDKSCNIY
101: SLSDNNNKNS VLLVSVQLPV SPERSNLVSR LLIGQDIVPE RVIILDSIQS RNFRGRLSPD EALTAKLETS SEKKAAATSR LNLDYFPSGS VIDGLSASLL
201: SRCQLKNIRG TLVVSWPEFD PSVVRFVGGL LKSIVPGLDI KSVGKDLEMY SSRSGLKKDA WLDSDLYT
101: SLSDNNNKNS VLLVSVQLPV SPERSNLVSR LLIGQDIVPE RVIILDSIQS RNFRGRLSPD EALTAKLETS SEKKAAATSR LNLDYFPSGS VIDGLSASLL
201: SRCQLKNIRG TLVVSWPEFD PSVVRFVGGL LKSIVPGLDI KSVGKDLEMY SSRSGLKKDA WLDSDLYT
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
Arabidopsis Description
AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.