Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G143400.1 | Wheat | cytosol | 97.07 | 97.07 |
| TraesCS3B01G161700.1 | Wheat | cytosol | 96.65 | 96.65 |
| TraesCS3D01G144200.1 | Wheat | cytosol | 96.23 | 96.23 |
| Zm00001d039354_P001 | Maize | extracellular | 77.82 | 78.15 |
| KXG31546 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 78.24 | 77.92 |
| Os01t0219000-00 | Rice | peroxisome | 79.08 | 76.52 |
| KRH71066 | Soybean | cytosol | 35.98 | 34.13 |
| Bra026521.1-P | Field mustard | cytosol | 32.22 | 28.73 |
| AT3G25545.1 | Thale cress | cytosol | 31.38 | 28.09 |
| CDY46498 | Canola | nucleus | 31.38 | 27.88 |
| CDX99773 | Canola | cytosol | 30.96 | 27.41 |
| Solyc05g010290.1.1 | Tomato | cytosol | 30.96 | 27.41 |
| PGSC0003DMT400064666 | Potato | cytosol, plastid | 30.13 | 26.67 |
| VIT_09s0002g08050.t01 | Wine grape | cytosol | 12.55 | 23.26 |
| CDY33125 | Canola | cytosol | 17.57 | 22.22 |
| VIT_01s0010g01100.t01 | Wine grape | cytosol, nucleus, plasma membrane | 31.38 | 19.04 |
Protein Annotations
| EMBL:AK356497 | EMBL:AK363425 | EnsemblPlants:HORVU3Hr1G027540.1 | EnsemblPlantsGene:HORVU3Hr1G027540 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | PANTHER:PTHR37227 | SEG:seg | UniParc:UPI0002004B8C |
| UniProt:F2CXZ3 | MapMan:35.2 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CXZ3]
Coordinates
chrchr3H:+:118884357..118885596
Molecular Weight (calculated)
24518.8 Da
IEP (calculated)
9.682
GRAVY (calculated)
0.180
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDVVTDAPP PSRFSPDDLD NFAASLPQPT PILVASPNPS PAPRLLVVLI SPTSLALLPS PPPPLHASLL LPDLPLQQSR APIRVYLHPS SGALLAVAHG
101: AIPTHRARAA ARSLISGLQP EEVLVLDAVR SGAYRGRLAA DELVEGKLET GAARRRGGVG AAKGVATLAP PGSVMDGLGA AVMTECEIRG KAASMVVTWP
201: AAARPSDFGV MRRVAAELGV DLKAAARVSG RAGLGALYT
101: AIPTHRARAA ARSLISGLQP EEVLVLDAVR SGAYRGRLAA DELVEGKLET GAARRRGGVG AAKGVATLAP PGSVMDGLGA AVMTECEIRG KAASMVVTWP
201: AAARPSDFGV MRRVAAELGV DLKAAARVSG RAGLGALYT
001: MEDVLTENPP PSRFFQEDLN NFVQPPESLP SPFIIFSNPK PELPLRPSLL IIAISSPSLY IFHSLPSKTL LGSLIMPEVP FSGNTMEPSL EDKSCNIYSL
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
101: SSADDKNLTL LVSVQLPVSP ERSNLVSRLL IAKDIIPERV IILDSIQSRN FRGRLSPDET LAAKLETSAE KKATTHTGLV NLDYFPSGSV IDGLSASLLS
201: RCQLKNIRGT LVISWPEFGP SVIRFAGALL KKIVPSLDVA SVNKDLEKNS SRTGLKKDTW LDSDLYT
Arabidopsis Description
AT3g25550/MWL2_17 [Source:UniProtKB/TrEMBL;Acc:Q9LSU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.