Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G017260.3 | Barley | cytosol | 74.29 | 46.02 |
| HORVU6Hr1G058050.2 | Barley | cytosol | 88.57 | 35.84 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 87.14 | 20.27 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 87.14 | 20.2 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 92.86 | 17.86 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 91.43 | 17.58 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 40.0 | 16.97 |
| Zm00001d002027_P002 | Maize | extracellular | 80.0 | 15.47 |
| KXG27287 | Sorghum | cytosol | 77.14 | 14.48 |
| Bra012351.1-P | Field mustard | cytosol | 62.86 | 12.36 |
| AT1G22920.1 | Thale cress | cytosol | 62.86 | 12.32 |
| GSMUA_Achr10P... | Banana | cytosol | 64.29 | 12.23 |
| Bra024548.1-P | Field mustard | cytosol | 61.43 | 12.08 |
| Solyc06g073150.2.1 | Tomato | cytosol | 62.86 | 11.99 |
| PGSC0003DMT400069203 | Potato | cytosol | 62.86 | 11.99 |
| Solyc11g017300.1.1 | Tomato | cytosol | 61.43 | 11.72 |
| PGSC0003DMT400023896 | Potato | cytosol | 61.43 | 11.72 |
| AT1G71230.1 | Thale cress | cytosol | 58.57 | 11.45 |
| KRH61926 | Soybean | nucleus | 58.57 | 10.96 |
| CDY12502 | Canola | cytosol | 54.29 | 10.76 |
| KRH52586 | Soybean | cytosol, nucleus | 58.57 | 10.02 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 30.0 | 8.61 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 27.14 | 7.92 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 25.71 | 7.41 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 40.0 | 7.04 |
| HORVU1Hr1G058180.1 | Barley | plastid | 30.0 | 5.98 |
| HORVU3Hr1G037790.1 | Barley | nucleus, plastid | 28.57 | 5.52 |
| HORVU7Hr1G096410.6 | Barley | cytosol, plastid | 18.57 | 3.9 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 2.86 | 0.79 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 0.0 | 0.0 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 0.0 | 0.0 |
| VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G067660.1 | EnsemblPlantsGene:HORVU2Hr1G067660 | Gene3D:3.40.140.10 | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | UniParc:UPI000B471B19 |
| UniProt:A0A287IAF6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:473864880..473865091
Molecular Weight (calculated)
7763.3 Da
IEP (calculated)
9.047
GRAVY (calculated)
-0.369
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: PAAASHPDAM DAIYHYDEAA NARAHQEKPW ATDPHHFRRA RISALALLKM VVHARAGGTI EIMGLMQGRY
1: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQG
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.