Factsheet for HORVU1Hr1G019320.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	HORVU1Hr1G028520.1	AT3G13710.1	21798944
AT3G23280.1	HORVU3Hr1G018940.2	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G107100.1	Wheat	cytosol	90.06	93.39
TraesCS1A01G088100.2	Wheat	cytosol	89.49	91.91
TraesCS1D01G089400.1	Wheat	cytosol	90.06	86.96
Os07t0446100-01	Rice	cytosol	73.73	76.61
EER98436	Sorghum	cytosol	69.98	72.29
Zm00001d019547_P002	Maize	cytosol	69.79	71.95
HORVU3Hr1G065130.2	Barley	cytosol	51.97	54.21
CDY68171	Canola	cytosol	9.01	53.93
KRH34390	Soybean	cytosol	44.84	52.41
KRG92416	Soybean	cytosol	44.84	52.3
CDY71158	Canola	nucleus	32.65	51.63
Bra014934.1-P	Field mustard	nucleus	42.78	50.89
PGSC0003DMT400044357	Potato	nucleus	47.65	50.7
AT3G23280.1	Thale cress	nucleus	43.34	50.0
GSMUA_Achr5P14580_001	Banana	cytosol	48.41	49.9
Solyc09g090160.2.1	Tomato	nucleus	46.72	49.7
Bra028419.1-P	Field mustard	nucleus	35.08	49.08
VIT_05s0049g01160.t01	Wine grape	nucleus	45.97	49.0
CDY49072	Canola	cytosol	35.08	48.95
CDX67415	Canola	cytosol	34.9	48.69
VIT_12s0028g03750.t01	Wine grape	cytosol	45.22	48.49
AT4G14365.1	Thale cress	cytosol	33.96	48.14
CDY08992	Canola	cytosol	39.4	47.62
CDX77533	Canola	cytosol	31.71	47.47
Bra014932.1-P	Field mustard	cytosol	31.71	47.47
CDX85079	Canola	cytosol	31.52	47.19
CDX85082	Canola	nucleus	42.96	44.73
CDY08997	Canola	cytosol	31.52	44.68
CDY03596	Canola	cytosol	27.2	44.48
Bra014247.1-P	Field mustard	nucleus	24.95	44.04
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	48.41	42.43
CDY62836	Canola	nucleus	32.08	41.4
PGSC0003DMT400028272	Potato	nucleus	42.03	39.79
Solyc06g008500.2.1	Tomato	cytosol	39.96	38.1
CDY35522	Canola	cytosol	34.33	32.62
Bra023739.1-P	Field mustard	vacuole	33.21	29.35

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:A0A287ET43	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G019320	EnsemblPlants:HORVU1Hr1G019320.3
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023
PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000B47367A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:72456075..72463987

Molecular Weight (calculated)

56830.9 Da

IEP (calculated)

7.353

GRAVY (calculated)

-0.252

Length

533 amino acids

Sequence
(BLAST)

001: QFCAVRRVQM GLQQSKEELL YQQVNYGNIE GIRNLRAQGA GVEWIDKEGK TPLMVASMRP DLLNVAKALL ELGANVNAYR PGSHAGTALH HAAKKGLDPT
101: VHLLLSHGAN PFITNDDCNT ALDLAREKGH VNVVRAIEGR ISLFSGWMRE NYGPGFLEAF APQLLTRKIW AVILPREARS PARPVKLELA IYPDLQAAKP
201: RVVVKLWKSQ LEEPKYNLAD PSMTIFDKVT KSRYKLLPAY EGDKQQLRSF YSACCGMAQV ASMVPTRPVN APNPNPAPNP SSAPSVESTP SKEDVELAMA
301: INASIQSAIA EGVPNVQPMT STNSSLNGWG SPDSPAPSKM SGQAQVDAPS SSKYNGWDVP GTSSNQSSLK PNKSQNNNPS IVIPPEASVS LPTPAALPVP
401: TPTALPTLPT PTALPTLPTP TAPPLAEGTF YDGPIEYPSI DFTPVDVTMP ATEGGGTALN SAKPVENEAD ASSSGNTPSG TCVICLDAPV EGACIPCGHM
501: AGCMSCLKDI ESKKWGCPIC RAKINQIIRL YAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.