CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08992	Canola	cytosol	64.35	81.86
CDX85082	Canola	nucleus	57.75	63.28
CDY71158	Canola	nucleus	37.08	61.72
AT3G23280.1	Thale cress	nucleus	49.38	59.96
CDY08997	Canola	cytosol	37.61	56.12
CDY62836	Canola	nucleus	40.64	55.21
CDX77533	Canola	cytosol	34.22	53.93
CDX85079	Canola	cytosol	34.05	53.65
CDX67415	Canola	cytosol	35.65	52.36
CDY49072	Canola	cytosol	35.12	51.57
CDY03596	Canola	cytosol	28.52	49.08
VIT_05s0049g01160.t01	Wine grape	nucleus	40.29	45.2
KRG92416	Soybean	cytosol	36.72	45.08
KRH34390	Soybean	cytosol	36.54	44.96
CDY68171	Canola	cytosol	7.13	44.94
Solyc09g090160.2.1	Tomato	nucleus	39.39	44.11
PGSC0003DMT400044357	Potato	nucleus	38.32	42.91
Os07t0446100-01	Rice	cytosol	33.33	36.45
TraesCS1B01G107100.1	Wheat	cytosol	32.62	35.6
EER98436	Sorghum	cytosol	32.62	35.47
TraesCS1A01G088100.2	Wheat	cytosol	32.62	35.26
Zm00001d019547_P002	Maize	cytosol	31.73	34.43
HORVU1Hr1G019320.3	Barley	cytosol	32.62	34.33
TraesCS1D01G089400.1	Wheat	cytosol	32.62	33.15
HORVU3Hr1G065130.2	Barley	cytosol	28.16	30.92
GSMUA_Achr5P14580_001	Banana	cytosol	25.85	28.05
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	29.23	26.97

Protein Annotations

KEGG:00053+1.13.99.1	KEGG:00562+1.13.99.1	Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078HCM6
UniProt:A0A078HCM6	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY35522	ProteinID:CDY35522
ProteinID:CDY35522.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019310	GO:GO:0050113	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00058567001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
InterPro:Inositol_oxygenase	PFAM:PF05153	PFAM:PF12796	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	MetaCyc:PWY-4841	SMART:SM00184	SMART:SM00248
SUPFAM:SSF109604	SUPFAM:SSF48403	SUPFAM:SSF57850	UniPathway:UPA00111	UniParc:UPI0004EDD832	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA01g23900DBnaA01g23900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCM6]

Coordinates

chrLK032353:+:372736..376494

Molecular Weight (calculated)

63033.3 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.477

Length

561 amino acids

Sequence
(BLAST)

001: MAIGIVGDAA TAYTTDKSDI RHDEMGLNTQ AEHDRLEKIV PQQQRVGFAA LHKSEAYKHL MNNEDRENMK WLKVFNKYDL YGKSKVRINV EEVKSYYISL
101: IIKDRFNYQR RYFFFWTLYN QLFLLSFSEG KMGQQQSKGE LLFEQVSYGN SEGIQSLHRE GADLEWMDRE GKTPLIMACM NSELYDVAET LIELGANVNA
201: YCPARHAGTP LHHAAKRGFE NIVKLLLSHC GVSHMQIHLF SMMIARHHLR SLESKGSAML YVPLRVTSAY SLLLSRKVWV VIVPTGSRNP SKPFKLELVI
301: YASLQEAQPR AVMPLWKANL EEPKPKQSDT SVIIVENSRI PRRRRQRRKR RHQVVRQTRL RLAPFIEGDE QQLKWFCDAC KGIPQTTHPS NFLQTAPSAP
401: PLHHAMSETP NANHHSIDEA SSSTTPPPPP PPPSSGKAST SGLNSHESVI VHEPSPSVSP LTDDDDVQTP EEGPFHYPTI DSTPVDVPSS YPLPASAEGE
501: KKEDGISGQC SICLDAPSDT VCTPCGHVAG CMSCLTEIKS KNYGCPVCRA KIDQITKLYR V

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.