CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77533	Canola	cytosol	96.91	96.91
CDY68171	Canola	cytosol	14.61	58.43
CDY71158	Canola	nucleus	51.97	54.9
CDY49072	Canola	cytosol	56.18	52.36
CDX67415	Canola	cytosol	55.34	51.57
CDY08992	Canola	cytosol	61.24	49.43
CDY03596	Canola	cytosol	44.1	48.16
AT3G23280.1	Thale cress	nucleus	62.36	48.05
CDX85082	Canola	nucleus	66.01	45.9
CDY08997	Canola	cytosol	46.35	43.88
CDY62836	Canola	nucleus	49.16	42.37
KRH34390	Soybean	cytosol	50.56	39.47
KRG92416	Soybean	cytosol	50.28	39.17
VIT_05s0049g01160.t01	Wine grape	nucleus	54.21	38.6
Solyc09g090160.2.1	Tomato	nucleus	51.69	36.73
PGSC0003DMT400044357	Potato	nucleus	51.12	36.33
CDY35522	Canola	cytosol	53.65	34.05
Os07t0446100-01	Rice	cytosol	47.75	33.14
TraesCS1B01G107100.1	Wheat	cytosol	46.91	32.49
TraesCS1A01G088100.2	Wheat	cytosol	46.91	32.18
EER98436	Sorghum	cytosol	46.07	31.78
Zm00001d019547_P002	Maize	cytosol	45.79	31.53
HORVU1Hr1G019320.3	Barley	cytosol	47.19	31.52
TraesCS1D01G089400.1	Wheat	cytosol	46.63	30.07
HORVU3Hr1G065130.2	Barley	cytosol	42.13	29.35
GSMUA_Achr5P14580_001	Banana	cytosol	39.89	27.47
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	39.61	23.19

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078D9Z4	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX85079	ProteinID:CDX85079	ProteinID:CDX85079.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00142548001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF00023	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EEAF6D	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaC07g08270D

Coordinates

chrLK031840:+:211236..213538

Molecular Weight (calculated)

39207.5 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.226

Length

356 amino acids

Sequence
(BLAST)

001: MGQMQSKEKL MFNHVRSGNV EGIRALCLEG ANLEWMDKEG NTPLILACKK SKLYDVAQTL IELGANVNSH PPAPRDATPL YHAARRGLEK TVKLLLSNGV
101: NYDCQTPLQQ ARYYKYTKVV RAIENHICVF SGWMREFYGP SLLGVFAPQL LSRRVWVVII PTSSIYPKPY KFELVVYASL KDAQPRVVMA LRNPHLKEPE
201: EMHPNTSVTI VDNDNTKKKS LKLAPSIEEG RQQLKWFCDA CKGIPQPVRP PVVVQTVLPS APPLADYDTE AVEEGPMHYP LSGSTTPSAS VGGGNTEDGG
301: SSGQCLICMD APSDGICVPC GHVAGCMSCL TQIKSHASEC PICRANIHQV MKVYRV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.