Factsheet for TraesCS1D01G089400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G107100.1	Wheat	cytosol	90.22	96.89
TraesCS1A01G088100.2	Wheat	cytosol	90.4	96.15
HORVU1Hr1G019320.3	Barley	cytosol	86.96	90.06
Os07t0446100-01	Rice	cytosol	71.38	76.8
EER98436	Sorghum	cytosol	68.12	72.87
Zm00001d019547_P002	Maize	cytosol	67.93	72.53
HORVU3Hr1G065130.2	Barley	cytosol	50.72	54.79
CDY68171	Canola	cytosol	8.7	53.93
KRH34390	Soybean	cytosol	42.93	51.97
KRG92416	Soybean	cytosol	42.75	51.64
CDY71158	Canola	nucleus	31.34	51.34
PGSC0003DMT400044357	Potato	nucleus	46.01	50.7
Bra014934.1-P	Field mustard	nucleus	40.94	50.45
AT3G23280.1	Thale cress	nucleus	41.85	50.0
Solyc09g090160.2.1	Tomato	nucleus	45.11	49.7
VIT_05s0049g01160.t01	Wine grape	nucleus	44.75	49.4
GSMUA_Achr5P14580_001	Banana	cytosol	46.2	49.32
Bra028419.1-P	Field mustard	nucleus	33.7	48.82
CDY49072	Canola	cytosol	33.33	48.17
CDX67415	Canola	cytosol	33.33	48.17
VIT_12s0028g03750.t01	Wine grape	cytosol	43.12	47.89
AT4G14365.1	Thale cress	cytosol	32.61	47.87
CDY08992	Canola	cytosol	38.04	47.62
CDX77533	Canola	cytosol	30.25	46.91
Bra014932.1-P	Field mustard	cytosol	30.25	46.91
CDX85079	Canola	cytosol	30.07	46.63
CDX85082	Canola	nucleus	41.12	44.34
CDY03596	Canola	cytosol	26.09	44.17
Bra014247.1-P	Field mustard	nucleus	24.09	44.04
CDY08997	Canola	cytosol	29.89	43.88
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	46.92	42.6
CDY62836	Canola	nucleus	30.98	41.4
PGSC0003DMT400028272	Potato	nucleus	40.04	39.25
Solyc06g008500.2.1	Tomato	cytosol	38.59	38.1
CDY35522	Canola	cytosol	33.15	32.62
Bra023739.1-P	Field mustard	vacuole	32.43	29.68

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1D01G089400	EnsemblPlants:TraesCS1D01G089400.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:75655640..75660116

Molecular Weight (calculated)

59153.9 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.218

Length

552 amino acids

Sequence
(BLAST)

001: MGMQQSKEEL LYQQVNYGNI EGIRNLRAQG AGVEWIDKEG KTPLMVASMR PDLLNVAKAL IELGANVNAY RPGSHAGTAL HHAAKKGLDP TVHLLLSHGA
101: NPFITNDDCN TALDLAREKG HVNVVRAIEG RISLFSGWMR ENYGPGFLEA FAPQFMTRKI WAVILPREAR SPTRPVKLEL AIYPELQAAK PRVVVKLWKS
201: QLEEPKYNLA DPSMTIFDKV TMIPPALYRA RAHMYVVIHF ALYTKCISLC KCSVGKWTIE SRYKLLPAYE GDKQQLRSFY SACCGMAQVA SMVPARPVNA
301: PSPNPTPNPS SAPSAESTPS KEDVELAMAI NASIQSAIAE GVPNVQPMAS TNSSLNGWGS PNSPAPSKTS GQAQVDAPSS SKYNGWDVPG TSSNQSSSKP
401: NKSQNNNPSI VIPPEALPVP TPTALPVPTP TALPTLPTPT APPLAEGTFY DGPIEYPSID FTPVDVTMPP TEGGGTALNS AKPVENEAVA SSSGNTPSGT
501: CVICLDAPVE GACIPCGHMA GCMSCLKDIE SKKWGCPICR AKINQIIRLY AV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.