Factsheet for Bra014247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03596	Canola	cytosol	93.71	86.81
CDY68171	Canola	cytosol	20.2	68.54
Bra028419.1-P	Field mustard	nucleus	78.48	62.2
AT4G14365.1	Thale cress	cytosol	61.59	49.47
Bra014934.1-P	Field mustard	nucleus	59.27	39.96
Bra014932.1-P	Field mustard	cytosol	45.03	38.2
VIT_05s0049g01160.t01	Wine grape	nucleus	52.65	31.8
KRG92416	Soybean	cytosol	47.35	31.29
KRH34390	Soybean	cytosol	46.36	30.7
Solyc09g090160.2.1	Tomato	nucleus	50.33	30.34
PGSC0003DMT400044357	Potato	nucleus	49.67	29.94
TraesCS1B01G107100.1	Wheat	cytosol	43.38	25.49
Os07t0446100-01	Rice	cytosol	43.05	25.34
TraesCS1A01G088100.2	Wheat	cytosol	43.38	25.24
HORVU1Hr1G019320.3	Barley	cytosol	44.04	24.95
EER98436	Sorghum	cytosol	41.72	24.42
Zm00001d019547_P002	Maize	cytosol	41.39	24.18
TraesCS1D01G089400.1	Wheat	cytosol	44.04	24.09
HORVU3Hr1G065130.2	Barley	cytosol	38.08	22.5
Bra023739.1-P	Field mustard	vacuole	42.38	21.23
GSMUA_Achr5P14580_001	Banana	cytosol	32.12	18.76
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	33.11	16.45

Protein Annotations

EnsemblPlants:Bra014247.1	EnsemblPlants:Bra014247.1-P	EnsemblPlantsGene:Bra014247	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002545FBA	UniProt:M4DCN1	MapMan:19.2.2.1.5.3.2

Description

AT4G14365 (E=2e-079) | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein

Coordinates

chrA08:+:2217043..2219382

Molecular Weight (calculated)

33280.2 Da

IEP (calculated)

7.909

GRAVY (calculated)

-0.228

Length

302 amino acids

Sequence
(BLAST)

001: MGQQQLKDEM LFQKVNHNDV ESIKSHCHEG AGLEVLSTAL AKGYSDTVRA IESRICLFSG WMRELYGPSF LELCSPDQLL SRKVWVVIVP TDSRNPLKLE
101: LVVYASLQDA KPMKEIPLWK ANLEELGSDQ SDASVMIVCN SSRLKKQRKR GYISHARRWA QVDRQMRLKL AAATKGDIKH LNSFCEACKG TPQPMNPPMF
201: MKTTEDIISN EVTPSVPLPR AVTVETEDGS VHYPSFSCAA YESKGSGGGS GVCVICEDAS SEAACVPCGH VAGCVSCLKE IKNKKCPICR ASIDQVIKLY
301: HV

Best Arabidopsis Sequence Match ( AT4G14365.1 )
(BLAST)

001: MGQQQSQSKD EMLFQEVSNN NVEGIKSLHH EGAGLEGVDK LGRTPLILAC TNDDLYDVAK TLLELGSNVN AYRSGCNGGT PLHHAAKRGL VHTVKLLLSH
101: GANPLVLDDD VKTALEVARD EGYSNVVRAI ESHICLFSGC MREYSGSSLL NLFAPQLLSR KVWVVVVPTG SRNPTKPLKL ELVLYDSIQD AQPRMVIPLW
201: KANLEEPKSF RCDDSVMIID DSRSPKSMRQ RRESGFISQA RRWAQVDRQI RLKLAAEIKG DMKQMNWFSE ACKGVPQPMN PPRFMKTSQA TTTTTNVPAL
301: SDDALTRVAM SLPSPKTANK EDGLCVICVD APSEAVCVPC GHVAGCISCL KEIENKKMGC PVCRANIDQV IKLYHV

Arabidopsis Description

XBAT34Putative E3 ubiquitin-protein ligase XBAT34 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.