Factsheet for Bra014934.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021504.1-P
Bra027406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G23280.1	Bra027406.1-P	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71158	Canola	nucleus	67.41	89.61
CDX85082	Canola	nucleus	99.78	87.3
AT3G23280.1	Thale cress	nucleus	81.7	79.22
Bra028419.1-P	Field mustard	nucleus	58.26	68.5
Bra014932.1-P	Field mustard	cytosol	52.46	66.01
Bra014247.1-P	Field mustard	nucleus	39.96	59.27
VIT_05s0049g01160.t01	Wine grape	nucleus	62.72	56.2
KRH34390	Soybean	cytosol	56.7	55.7
KRG92416	Soybean	cytosol	56.25	55.14
Solyc09g090160.2.1	Tomato	nucleus	60.71	54.29
PGSC0003DMT400044357	Potato	nucleus	59.6	53.29
Bra023739.1-P	Field mustard	vacuole	71.65	53.23
Os07t0446100-01	Rice	cytosol	50.89	44.44
TraesCS1B01G107100.1	Wheat	cytosol	50.89	44.36
TraesCS1A01G088100.2	Wheat	cytosol	50.45	43.55
EER98436	Sorghum	cytosol	50.0	43.41
HORVU1Hr1G019320.3	Barley	cytosol	50.89	42.78
Zm00001d019547_P002	Maize	cytosol	49.33	42.75
TraesCS1D01G089400.1	Wheat	cytosol	50.45	40.94
HORVU3Hr1G065130.2	Barley	cytosol	44.42	38.94
GSMUA_Achr5P14580_001	Banana	cytosol	39.96	34.62
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	41.29	30.43

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra014934	EnsemblPlants:Bra014934.1	EnsemblPlants:Bra014934.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4DEL2
PFAM:PF00023	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002540E76
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G23280 (E=1e-147) | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein

Coordinates

chrA07:-:5103172..5105438

Molecular Weight (calculated)

48739.3 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.365

Length

448 amino acids

Sequence
(BLAST)

001: MGQQQSKGEL LFQQVSYGNA EGIRSLRREG ADLEWMDREG KTPLIMACMN SELYDVAKTL IELGANVNAY RPARHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIES HICLFSGWMR EFYGPAILDL FAPQLLSRRV WVVIVPTGSR NPAKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKGKQS DTSVMIVDNS TIPSRRRQRR RACASHGRRR PQVVRQTRLK LAPSIEGDGQ QLKWFCDACK GIPQPAHPPV FLQTAPSAPP LHPAMSDTPD
301: INHHSIGEAS SSSAPLPPTP PPSGKASTSG FNSHESVTVH EPSPSAPPLA DEDMETVEEG PIHYPTIDST PVDVPSPSSL PASTDGEKKD DGSSGQCSIC
401: LDAPSEAVCV PCGHVAGCMS CLTEIKAKKW GCPVCRAKID QIIKLYRV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.