Factsheet for GSMUA_Achr5P14580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	78.14	66.45
CDY68171	Canola	cytosol	9.28	53.93
TraesCS1B01G107100.1	Wheat	cytosol	49.32	49.61
CDY71158	Canola	nucleus	32.3	49.55
HORVU1Hr1G019320.3	Barley	cytosol	49.9	48.41
TraesCS1A01G088100.2	Wheat	cytosol	48.55	48.36
Os07t0446100-01	Rice	cytosol	47.58	47.95
Zm00001d019547_P002	Maize	cytosol	46.42	46.42
EER98436	Sorghum	cytosol	46.23	46.32
TraesCS1D01G089400.1	Wheat	cytosol	49.32	46.2
KRH34390	Soybean	cytosol	38.88	44.08
KRG92416	Soybean	cytosol	38.49	43.54
VIT_12s0028g03750.t01	Wine grape	cytosol	41.59	43.26
PGSC0003DMT400044357	Potato	nucleus	41.39	42.71
VIT_05s0049g01160.t01	Wine grape	nucleus	40.81	42.2
Solyc09g090160.2.1	Tomato	nucleus	40.81	42.12
AT3G23280.1	Thale cress	nucleus	36.56	40.91
Bra014934.1-P	Field mustard	nucleus	34.62	39.96
Bra028419.1-P	Field mustard	nucleus	29.4	39.9
CDX85079	Canola	cytosol	27.47	39.89
CDX77533	Canola	cytosol	27.27	39.61
Bra014932.1-P	Field mustard	cytosol	27.08	39.33
CDY49072	Canola	cytosol	29.01	39.27
CDX67415	Canola	cytosol	28.82	39.01
CDY08992	Canola	cytosol	33.27	39.0
AT4G14365.1	Thale cress	cytosol	27.66	38.03
CDY08997	Canola	cytosol	25.73	35.37
CDX85082	Canola	nucleus	34.43	34.77
HORVU3Hr1G065130.2	Barley	cytosol	34.24	34.64
CDY03596	Canola	cytosol	21.66	34.36
PGSC0003DMT400028272	Potato	nucleus	36.36	33.39
CDY62836	Canola	nucleus	26.11	32.69
Solyc06g008500.2.1	Tomato	cytosol	34.82	32.2
Bra014247.1-P	Field mustard	nucleus	18.76	32.12
Bra023739.1-P	Field mustard	vacuole	33.66	28.86
CDY35522	Canola	cytosol	28.05	25.85

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G14580_001	EnsemblPlants:GSMUA_Achr5P14580_001	EnsemblPlants:GSMUA_Achr5T14580_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SYI7
PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000294B62E
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Probable E3 ubiquitin-protein ligase XBOS34 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14580_001]

Coordinates

chr5:-:10521701..10527135

Molecular Weight (calculated)

55868.5 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.240

Length

517 amino acids

Sequence
(BLAST)

001: MGAQQSKEEL LYQQVNYGNI EGIRALRSQG AGLEWMDKEG KTPLIVACLR HDLLPVAKAL IEMGANVNVY RPGCHAGTPL HHAAKKGLEQ TVHLLISNGA
101: NPFIMNDDCH TALDLAREKG HINVVRAIEN RVSLFAGWLR EVHGPGFLEA LARQLLTRKI WVVVLPSDAR NPTRPLKFEL AIYSDLQTAR PRTVIQLWNV
201: HIEEPKFNQV DPAVIIVDKA TRARYKFLSA YEGDKQQLRW FFSACQGISQ VMDCISAMPT GTSVPSPPQV ISHASTQSTA APTSNPEDIE LEMAINASTR
301: TAIAEGMPPL IQSDPQTSNT NGWGSSSDNS SYNGWGTPDV DAPSKVNGQV LMNEPNTCNG WAVPEVQLNT NALQPYMRNP DTPVVQSSQG APSTQVVPSA
401: PPMMADTFYD GPIHYPSIDC SPIDLSMPLV KTASGTSEAK DSSTSSSSKT GTGEDKAGSS STTGCCVICL DAPVEGACIP CGHMAGCMSC LREIEAKNWG
501: CPVCRTKINQ IIKLYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.