CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68171	Canola	cytosol	26.07	95.51
Bra014247.1-P	Field mustard	nucleus	86.81	93.71
CDX67415	Canola	cytosol	80.67	68.85
CDY49072	Canola	cytosol	78.83	67.28
AT4G14365.1	Thale cress	cytosol	63.19	54.79
CDY71158	Canola	nucleus	48.16	46.59
CDX85079	Canola	cytosol	48.16	44.1
CDX77533	Canola	cytosol	47.55	43.54
CDY08992	Canola	cytosol	55.52	41.04
CDX85082	Canola	nucleus	60.43	38.48
CDY08997	Canola	cytosol	41.1	35.64
KRG92416	Soybean	cytosol	49.39	35.23
CDY62836	Canola	nucleus	44.17	34.87
VIT_05s0049g01160.t01	Wine grape	nucleus	53.37	34.8
KRH34390	Soybean	cytosol	48.16	34.43
Solyc09g090160.2.1	Tomato	nucleus	52.76	34.33
PGSC0003DMT400044357	Potato	nucleus	51.84	33.73
CDY35522	Canola	cytosol	49.08	28.52
TraesCS1B01G107100.1	Wheat	cytosol	43.87	27.82
TraesCS1A01G088100.2	Wheat	cytosol	43.87	27.55
Os07t0446100-01	Rice	cytosol	42.94	27.29
HORVU1Hr1G019320.3	Barley	cytosol	44.48	27.2
EER98436	Sorghum	cytosol	42.64	26.94
Zm00001d019547_P002	Maize	cytosol	42.64	26.89
TraesCS1D01G089400.1	Wheat	cytosol	44.17	26.09
HORVU3Hr1G065130.2	Barley	cytosol	40.49	25.83
GSMUA_Achr5P14580_001	Banana	cytosol	34.36	21.66
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	35.28	18.91

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078EQW3	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDY03596	ProteinID:CDY03596	ProteinID:CDY03596.1	EnsemblPlantsGene:GSBRNA2T00116343001	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF13920	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
PANTHER:PTHR44837:SF1	SMART:SM00184	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EDFBC8	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaC03g68550D

Coordinates

chrLK031944:-:746506..749425

Molecular Weight (calculated)

36046.6 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.172

Length

326 amino acids

Sequence
(BLAST)

001: MGQQQLKAEM LFQKVNHNDV ESIKSLCHEG AGLEWADKEG RTPLILACAE AELYDVAETL KVARAKGYSD TVRAIESLIC LFSGWMRELY GPSFLELCSP
101: YQLLSRKVWV VIVPTDSRNP LKLELFVYAS LQDAQPMMEI PLWKANLEEL GSDQSDASVM IVCNLSKLKK QRKRGYISHA RRWAQVDRQM RLKLAAATKG
201: DIKQLNSFCE ACKGTPQPMN PPMFMKTTEN IISNEVTPSV PLPRAVTVET GDDSVHYPSF SCADYESKGS SGGSGVCVIC EDASSEAACV PCGHVAGCVS
301: CLKEIKNKKC PICRASIDQV IKLYHV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.