Factsheet for HORVU3Hr1G065130.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	HORVU1Hr1G028520.1	AT3G13710.1	21798944
AT3G23280.1	HORVU3Hr1G018940.2	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G107100.1	Wheat	cytosol	54.79	54.47
CDY68171	Canola	cytosol	9.39	53.93
TraesCS1A01G088100.2	Wheat	cytosol	54.4	53.56
HORVU1Hr1G019320.3	Barley	cytosol	54.21	51.97
TraesCS1D01G089400.1	Wheat	cytosol	54.79	50.72
EER98436	Sorghum	cytosol	48.92	48.45
Os07t0446100-01	Rice	cytosol	48.14	47.95
Zm00001d019547_P002	Maize	cytosol	48.34	47.78
CDY71158	Canola	nucleus	29.75	45.1
AT4G14365.1	Thale cress	cytosol	32.88	44.68
Bra014934.1-P	Field mustard	nucleus	38.94	44.42
Bra028419.1-P	Field mustard	nucleus	33.07	44.36
CDX67415	Canola	cytosol	32.68	43.72
CDY49072	Canola	cytosol	32.49	43.46
KRH34390	Soybean	cytosol	38.55	43.2
KRG92416	Soybean	cytosol	38.36	42.89
CDX85079	Canola	cytosol	29.35	42.13
CDX77533	Canola	cytosol	29.16	41.85
Bra014932.1-P	Field mustard	cytosol	29.16	41.85
AT3G23280.1	Thale cress	nucleus	37.77	41.77
CDY08992	Canola	cytosol	36.01	41.72
PGSC0003DMT400044357	Potato	nucleus	40.31	41.12
Solyc09g090160.2.1	Tomato	nucleus	39.92	40.72
CDY03596	Canola	cytosol	25.83	40.49
VIT_12s0028g03750.t01	Wine grape	cytosol	39.14	40.24
VIT_05s0049g01160.t01	Wine grape	nucleus	39.14	40.0
CDY08997	Canola	cytosol	29.35	39.89
CDX85082	Canola	nucleus	38.94	38.87
Bra014247.1-P	Field mustard	nucleus	22.5	38.08
CDY62836	Canola	nucleus	28.77	35.59
GSMUA_Achr5P14580_001	Banana	cytosol	34.64	34.24
PGSC0003DMT400028272	Potato	nucleus	35.23	31.97
Solyc06g008500.2.1	Tomato	cytosol	34.44	31.48
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	35.42	29.77
CDY35522	Canola	cytosol	30.92	28.16
Bra023739.1-P	Field mustard	vacuole	30.14	25.54

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	Gene3D:3.30.70.270	UniProt:A0A287LDL2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU3Hr1G065130
EnsemblPlants:HORVU3Hr1G065130.2	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF56672	SUPFAM:SSF57850	UniParc:UPI000B467975
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:496705853..496716165

Molecular Weight (calculated)

55885.6 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.224

Length

511 amino acids

Sequence
(BLAST)

001: MGLRQSKAEL LFQQVNYGNV EGIRNLRAQG AGVEWINKEG KTPLMVASMR PDLLNVARLL ITLGANLNAF RPGSHAGTPL HHAAKRGLDL TVQLLLSHGA
101: NPFVRNDDCN TALDVARGKG HLNVVRAIEG QISLFSGWMR ENCGPPQVMT RKIWIVILPR EAQSPTRPVK LELSIYPESQ AAKPCVVAKL WKCQLEAPKY
201: NLVDPSMTIF DKVTTSRYEL LPAYEGDKQQ LRSFYSACCS VEQTINSIFC CRLPQETRAP NPSRLSLSLS RRDGAQPPAP ASPTSQSALP PLQPTSETCA
301: SWAEHLQHVA IIFNELRAHR LHLKRSKCSF GTTSAAYLGH VISADGVAMD ADKTINSIFC CRLPQETRAP NPSRLSLSHA ATAPNRRRRR PQPRSPHFHP
401: YNLRPRPASR MREVTGTSSS QSIVIPQEAP PAIPIPIALP STQTPTAPPL ADGDGTFVTC VICLDAPVEG ACIPCGHMAG CMSCLTDIES KKCGCPICRA
501: EINQIIRLYA V

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.