CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	KRH10001	AT3G13710.1	21798944
AT3G23280.1	KRH23330	AT3G13710.1	21798944
AT3G23280.1	KRH44167	AT3G13710.1	21798944
AT3G23280.1	KRH47141	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92416	Soybean	cytosol	93.86	93.65
VIT_05s0049g01160.t01	Wine grape	nucleus	64.69	59.0
CDY68171	Canola	cytosol	11.4	58.43
CDY71158	Canola	nucleus	42.76	57.86
Bra014934.1-P	Field mustard	nucleus	55.7	56.7
Solyc09g090160.2.1	Tomato	nucleus	60.75	55.29
AT3G23280.1	Thale cress	nucleus	55.7	54.98
PGSC0003DMT400044357	Potato	nucleus	60.09	54.69
CDY08992	Canola	cytosol	52.41	54.2
AT4G14365.1	Thale cress	cytosol	44.3	53.72
Bra028419.1-P	Field mustard	nucleus	44.52	53.28
CDX67415	Canola	cytosol	44.52	53.14
CDY49072	Canola	cytosol	43.86	52.36
CDX77533	Canola	cytosol	39.91	51.12
Bra014932.1-P	Field mustard	cytosol	39.91	51.12
CDX85079	Canola	cytosol	39.47	50.56
CDX85082	Canola	nucleus	55.48	49.41
CDY08997	Canola	cytosol	40.57	49.2
CDY03596	Canola	cytosol	34.43	48.16
Bra014247.1-P	Field mustard	nucleus	30.7	46.36
TraesCS1B01G107100.1	Wheat	cytosol	51.75	45.91
Os07t0446100-01	Rice	cytosol	51.54	45.81
TraesCS1A01G088100.2	Wheat	cytosol	51.54	45.28
Zm00001d019547_P002	Maize	cytosol	51.32	45.26
EER98436	Sorghum	cytosol	50.88	44.96
HORVU1Hr1G019320.3	Barley	cytosol	52.41	44.84
CDY62836	Canola	nucleus	40.35	44.55
TraesCS1D01G089400.1	Wheat	cytosol	51.97	42.93
GSMUA_Achr5P14580_001	Banana	cytosol	44.08	38.88
HORVU3Hr1G065130.2	Barley	cytosol	43.2	38.55
CDY35522	Canola	cytosol	44.96	36.54
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	45.18	33.88
Bra023739.1-P	Field mustard	vacuole	44.52	33.66

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100789309	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02006595	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_10G181100	GO:GO:0000151	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	UniProt:I1LC57	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH34390	ProteinID:KRH34390
ProteinID:KRH34390.1	PFAM:PF13857	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI00023CDB9C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:41462028..41467447

Molecular Weight (calculated)

48882.3 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.221

Length

456 amino acids

Sequence
(BLAST)

001: MGQGQSKDEL LYQQVSYGNA EGIKTLHREG AGLEWRDKDA KTPLIVACMN PRLYNVAKTL IELGANINAF RPGRHGGTPL HHAAKRGFDS IVKLLLLHGA
101: NPLVLNDDCL TALEVARTKG HSNVVRTIES HLCLFSGWLC EFHGPGFLEV LAPQLVSKKV WVVVLPVGSR TLAKPYKLEL AIYSRLQDAQ PRTVIGLWNA
201: NLQDPKLHQS DPSVTVVDRI TKTRVKLGPA SENDKQQLTW FSNACKGIPQ VSPAFLQNNV PTGPPTALPV AEDTELAMAI SASLQSAMQE RPPFSDTQPS
301: FEASSSSSAV NTGNHGFLGT PNPNTSDSEL VQEANPDGNT QHLQSHVNAS ALDLNPSAPP IANEILADGP IQYPSIDLSP VDMASPDAEK LPKGEKNAGG
401: SGSSCVICLD APAEGACIPC GHVAGCMSCL NEVKSKKWGC PVCRAKIDQV IKLYHV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.