CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	EES00126	AT3G13710.1	21798944
AT3G23280.1	OQU77594	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019547_P002	Maize	cytosol	91.86	91.68
Os07t0446100-01	Rice	cytosol	73.45	73.88
TraesCS1B01G107100.1	Wheat	cytosol	72.09	72.37
TraesCS1A01G088100.2	Wheat	cytosol	71.9	71.48
HORVU1Hr1G019320.3	Barley	cytosol	72.29	69.98
TraesCS1D01G089400.1	Wheat	cytosol	72.87	68.12
CDY68171	Canola	cytosol	9.3	53.93
KRH34390	Soybean	cytosol	44.96	50.88
AT3G23280.1	Thale cress	nucleus	44.96	50.22
CDY71158	Canola	nucleus	32.75	50.15
KRG92416	Soybean	cytosol	44.38	50.11
VIT_05s0049g01160.t01	Wine grape	nucleus	48.45	50.0
Bra014934.1-P	Field mustard	nucleus	43.41	50.0
HORVU3Hr1G065130.2	Barley	cytosol	48.45	48.92
PGSC0003DMT400044357	Potato	nucleus	47.48	48.9
VIT_12s0028g03750.t01	Wine grape	cytosol	46.51	48.29
Solyc09g090160.2.1	Tomato	nucleus	46.32	47.7
Bra028419.1-P	Field mustard	nucleus	34.88	47.24
CDY08992	Canola	cytosol	40.31	47.17
CDY49072	Canola	cytosol	34.5	46.6
CDX67415	Canola	cytosol	34.5	46.6
AT4G14365.1	Thale cress	cytosol	33.72	46.28
GSMUA_Achr5P14580_001	Banana	cytosol	46.32	46.23
CDX77533	Canola	cytosol	31.78	46.07
CDX85079	Canola	cytosol	31.78	46.07
Bra014932.1-P	Field mustard	cytosol	31.59	45.79
CDX85082	Canola	nucleus	43.6	43.95
CDY08997	Canola	cytosol	31.78	43.62
CDY03596	Canola	cytosol	26.94	42.64
Bra014247.1-P	Field mustard	nucleus	24.42	41.72
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	47.48	40.3
CDY62836	Canola	nucleus	31.59	39.47
PGSC0003DMT400028272	Potato	nucleus	42.05	38.54
Solyc06g008500.2.1	Tomato	cytosol	40.7	37.57
CDY35522	Canola	cytosol	35.47	32.62
Bra023739.1-P	Field mustard	vacuole	34.5	29.52

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:8059743	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5X526	EnsemblPlants:EER98436	ProteinID:EER98436	ProteinID:EER98436.1	GO:GO:0000151
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023
PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	EnsemblPlantsGene:SORBI_3002G122600	SUPFAM:SSF48403	SUPFAM:SSF57850
unigene:Sbi.1552	UniParc:UPI0001A84094	RefSeq:XP_002461915.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:16277702..16282471

Molecular Weight (calculated)

55383.9 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.299

Length

516 amino acids

Sequence
(BLAST)

001: MGLQQSKEEL LYQQVNYGNV DGIRTLRGQG VGLEWIDKEG KTPLMVACMR PDLFDVAKVL IELGANVNAY RPGSHCGTAL HHAAKKGLQQ TVHLLLSHGA
101: NPFIPNDDCN TALELAREKG HVNVVRAIEG RLSLFCGWMR ENYAPAFLDA IAPQFMTRKI WAVILPREVR TPTRPLKLEL AIYPELQASK PRVVVKLWKC
201: QIEQPKLNQA DPSIIIFDKG TKTRYKILPA YEGDKQQLQW FYNACCGMAQ VFNTAPVPPA NLPMPNPAPA NSSVAPSELS APSKEDVELA MAINASIQSA
301: IAEGVPNVQP NASTPNNNGW SIPPSNSHNG WGPSVTPAPS KTSGQSQARV DAPSSSSTYN GWDVPGTSSG QSSSKPHKTE TNPPVLIPQE ALQALPTPTA
401: PPFAEETFYS GPVHYPSIDS TPVDVTMPAT TEGGTTGSTT AAAPTKQEEN EADASDSGKT PSGTCVICLD APVEGACIPC GHMAGCMSCL KDIESKKWGC
501: PICRATINQV VRLYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.