Factsheet for PGSC0003DMT400028272

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008500.2.1	Tomato	cytosol	76.55	77.1
VIT_12s0028g03750.t01	Wine grape	cytosol	44.58	50.5
PGSC0003DMT400044357	Potato	nucleus	41.92	47.11
Os07t0446100-01	Rice	cytosol	39.25	43.08
TraesCS1B01G107100.1	Wheat	cytosol	39.08	42.8
TraesCS1A01G088100.2	Wheat	cytosol	39.08	42.39
EER98436	Sorghum	cytosol	38.54	42.05
HORVU1Hr1G019320.3	Barley	cytosol	39.79	42.03
Zm00001d019547_P002	Maize	cytosol	38.37	41.78
TraesCS1D01G089400.1	Wheat	cytosol	39.25	40.04
GSMUA_Achr5P14580_001	Banana	cytosol	33.39	36.36
HORVU3Hr1G065130.2	Barley	cytosol	31.97	35.23
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	34.1	31.58

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102580723	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1AQX5	PFAM:PF13857	PFAM:PF13920
EnsemblPlantsGene:PGSC0003DMG401010896	PGSC:PGSC0003DMG401010896	EnsemblPlants:PGSC0003DMT400028272	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF2	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000295A60E
RefSeq:XP_006365899.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Isoform 2 of Putative E3 ubiquitin-protein ligase XBAT35 [Source:PGSC_GENE;Acc:PGSC0003DMG401010896]

Coordinates

chr6:+:1472575..1481606

Molecular Weight (calculated)

62330.2 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.486

Length

563 amino acids

Sequence
(BLAST)

001: MGQQQSKNEL LYQQVIEGDV ESIKALHNDG ASLEWIDKDG KTPLIVACMK PNGLNVAKTL LELGANVNAY RPGYHAGTAL HHAAKRGLDD TVQLLLSYGA
101: NPLIKNDACQ TPLEVARAKG FSDVVRTIER QICIFSGWMR EFYGPGFLEA LAPQLLSRKI WVVVIPCGIA DPMRPLKLQL AIYSSLQDAQ PRNVIVLWRA
201: IVEEIRQQRS DPVLTIFDKT SNTRYKFTSV SDSEQQQLQL LHRACIASIE VLPSRLPQNT QTAATQSETA AQAMELAIGI NSSIDSAKEN KILHHHGQSS
301: GVKNENDWCN NTDDSAHSGW GSLVRSEPRS EITNNDWTDD RTKVQENGWG NTADVSSQQP QQSLPKSTPS ELSCSGWIDE PAVEEYNGWG VPEPRQRHRD
401: ASAEVHYQGW ENTSKDKTAS SDVSSWEAMD KTDNAPEFRP IVYPSENAET QEGNNPAFDF AVPSAPPVPE EVEDIHYPVI DLSPLHMSNP PVEQKTASVT
501: TQKEKEHEPA LCIICWEASV EGACVPCGHM VGCMQCLNQI KSKKGECPVC RVKIDQVIKL YSV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.