Factsheet for GSMUA_Achr4P18160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P09070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14580_001	Banana	cytosol	66.45	78.14
CDY68171	Canola	cytosol	8.39	57.3
CDY71158	Canola	nucleus	28.62	51.63
TraesCS1B01G107100.1	Wheat	cytosol	42.11	49.81
TraesCS1A01G088100.2	Wheat	cytosol	41.94	49.13
HORVU1Hr1G019320.3	Barley	cytosol	42.43	48.41
Os07t0446100-01	Rice	cytosol	40.46	47.95
EER98436	Sorghum	cytosol	40.3	47.48
TraesCS1D01G089400.1	Wheat	cytosol	42.6	46.92
Zm00001d019547_P002	Maize	cytosol	39.64	46.62
KRH34390	Soybean	cytosol	33.88	45.18
PGSC0003DMT400044357	Potato	nucleus	37.17	45.11
KRG92416	Soybean	cytosol	33.88	45.08
Solyc09g090160.2.1	Tomato	nucleus	36.84	44.71
VIT_05s0049g01160.t01	Wine grape	nucleus	35.86	43.6
VIT_12s0028g03750.t01	Wine grape	cytosol	35.03	42.86
AT3G23280.1	Thale cress	nucleus	32.07	42.21
Bra028419.1-P	Field mustard	nucleus	26.15	41.73
CDY08992	Canola	cytosol	30.26	41.72
Bra014934.1-P	Field mustard	nucleus	30.43	41.29
CDX67415	Canola	cytosol	25.66	40.84
CDY49072	Canola	cytosol	25.49	40.58
CDX85079	Canola	cytosol	23.19	39.61
CDX77533	Canola	cytosol	23.03	39.33
Bra014932.1-P	Field mustard	cytosol	22.86	39.04
AT4G14365.1	Thale cress	cytosol	23.68	38.3
CDY08997	Canola	cytosol	23.03	37.23
CDX85082	Canola	nucleus	31.09	36.91
HORVU3Hr1G065130.2	Barley	cytosol	29.77	35.42
CDY03596	Canola	cytosol	18.91	35.28
CDY62836	Canola	nucleus	23.36	34.38
PGSC0003DMT400028272	Potato	nucleus	31.58	34.1
Bra014247.1-P	Field mustard	nucleus	16.45	33.11
Solyc06g008500.2.1	Tomato	cytosol	30.26	32.92
Bra023739.1-P	Field mustard	vacuole	32.4	32.67
CDY35522	Canola	cytosol	26.97	29.23

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G18160_001	EnsemblPlants:GSMUA_Achr4P18160_001	EnsemblPlants:GSMUA_Achr4T18160_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SPX9
PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002955ED1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Probable E3 ubiquitin-protein ligase XBOS34 [Source:GMGC_GENE;Acc:GSMUA_Achr4G18160_001]

Coordinates

chr4:-:18784283..18803009

Molecular Weight (calculated)

66322.0 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.221

Length

608 amino acids

Sequence
(BLAST)

001: MNASRVRVGQ RQLISVLYGA LSHPCIRKKI GFDGLVILNL QTLVEPFIDA EFDSFPSKEN RNVLSLSSLV SVDLVVPVIL FLHKRFFDLR SKDYSMGLQQ
101: SKEELLYQQV NYGNIEGIKA LRSQGAGLEW MDKEGKTPLI VACLRHDLLP VAKILIELGA NVNVYRPGCH AGTPLHHAAK RGLEQTVHLL LSNGANPFIM
201: NDDCHTALDL AREKGHCNVV RAIESRISLF TGWLREVYGP GFLEALVPQL LTRKIWSVVL PCDARNPTRP LKFELAIYSD LQTARPRTVV PLWKVHIEEP
301: KFNQVDPAVI IVDKATRARY KFLSAREGDK QQLQWFFSSC QGISQVTNSL PVMPVDVSMP SPPQIISSAS TQSTAAPTSN PEDLELAMAI NASIQTAISE
401: GVPDIQPNPQ TSNTNDWASS SDNSTYNGWD TPNADTSSKM NGQGSTNEPY ASNGWEVQLN TSASQPNVQN PDTPVIQSSQ GAPPTQLVPS APPVTEDTFY
501: DGPIHYPSID CSPIDMKMSA VEDAPGTAEA KDGSTSSYSK PGSSEDKAES KSSSGCCVIC LDAPVEGACI PCGHMAGCMS CLRDIEAKNW GCPICRAKIK
601: QVIKLYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.