Factsheet for VIT_12s0028g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01160.t01	Wine grape	nucleus	54.73	54.4
Os07t0446100-01	Rice	cytosol	48.49	46.98
TraesCS1B01G107100.1	Wheat	cytosol	48.29	46.69
EER98436	Sorghum	cytosol	48.29	46.51
Zm00001d019547_P002	Maize	cytosol	47.89	46.03
TraesCS1A01G088100.2	Wheat	cytosol	47.48	45.47
HORVU1Hr1G019320.3	Barley	cytosol	48.49	45.22
PGSC0003DMT400028272	Potato	nucleus	50.5	44.58
Solyc06g008500.2.1	Tomato	cytosol	49.3	43.83
TraesCS1D01G089400.1	Wheat	cytosol	47.89	43.12
GSMUA_Achr5P14580_001	Banana	cytosol	43.26	41.59
HORVU3Hr1G065130.2	Barley	cytosol	40.24	39.14
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	42.86	35.03

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100247153	wikigene:100247153	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI21850	ProteinID:CBI21850.3	UniProt:E0CTD5	EMBL:FN595235
GO:GO:0000151	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EntrezGene:LOC100247153	wikigene:LOC100247153	PFAM:PF13857	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF2	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI00015C9F54	ArrayExpress:VIT_12s0028g03750	EnsemblPlantsGene:VIT_12s0028g03750	EnsemblPlants:VIT_12s0028g03750.t01	unigene:Vvi.5296	RefSeq:XP_002274072
RefSeq:XP_002274072.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4624623..4634060

Molecular Weight (calculated)

53177.4 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.195

Length

497 amino acids

Sequence
(BLAST)

001: MGQSAGSMGG RQSKDELLYQ HVATGNIEAI KALCREGASL EWFDSEAKTP LIVACMDSNL IMVAQTLIDL GANVNAYRPG REAGTPLHHA AKRGLDQTVK
101: LLLSKGANAL VRNDDGQTSL DVARINGYIN VVRTIENHIC LFSGWLRELH GPGFLKALAP QLLSRKIWVV IIPSGFNNPS KPLRLELVIY SNFQDAQPCT
201: VIALGNVNIE EPKFHQSDPA LIIFDKSNKT RYKLASANEG DKQQLRWLYN ACRGIPQVLP TPMLHDARPS VPASQTATEA AELAMAVGAS IQSAAVDQPV
301: LLSSTRLGSE ASSTNGWGNP VDNTSHGGWS LDGTPTHSAS SSSGWADESK RGEFNGLGVP ESRLIRNQTQ LNKTQNNIPQ VVQTSNTNPV LASPAPSAPP
401: IPEALTEGPV YYPPIDLSPV DLSVPAAEYD AAGTSKTKDK GDSSSCVICW EAPIEGACIP CGHMAGCMTC LNEIKAKKGV CPVCRAKIQQ VIKLYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.