Factsheet for Solyc06g008500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028272	Potato	nucleus	77.1	76.55
VIT_12s0028g03750.t01	Wine grape	cytosol	43.83	49.3
Solyc09g090160.2.1	Tomato	nucleus	39.18	43.71
Os07t0446100-01	Rice	cytosol	38.64	42.11
TraesCS1B01G107100.1	Wheat	cytosol	38.1	41.44
TraesCS1A01G088100.2	Wheat	cytosol	38.1	41.04
EER98436	Sorghum	cytosol	37.57	40.7
HORVU1Hr1G019320.3	Barley	cytosol	38.1	39.96
Zm00001d019547_P002	Maize	cytosol	36.85	39.85
TraesCS1D01G089400.1	Wheat	cytosol	38.1	38.59
GSMUA_Achr5P14580_001	Banana	cytosol	32.2	34.82
HORVU3Hr1G065130.2	Barley	cytosol	31.48	34.44
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	32.92	30.26

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0000151	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:K4C3N0	PFAM:PF13857	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF2	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g008500.2
EnsemblPlants:Solyc06g008500.2.1	UniParc:UPI0002766728	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr6:-:2391924..2399431

Molecular Weight (calculated)

62404.5 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.365

Length

559 amino acids

Sequence
(BLAST)

001: MWQQQLKNEL LYQQVIEGNA ENIKALYNDG ADVEWIDDEG KTPLIVACMK PNGLNVAKTL LELGANVNAY RPGYYAGTVL HHAAKRGLDD TVQLLLSYGA
101: NPLIKNDARQ TPLEIARAKG FTDVVRTIEK QICIFSGWMR EFYGPRFLEA LAPQLLSRKI WVVVMPCGIA DPVRHLKLQL VIYSSLQDAQ PRKVIVLWRA
201: IVEEIRRKQS DPMLTIFDRI KNTRYKISSV NDSDKQQLVL LRKACIAAIE VLPFRLPQIT QTETAAQAME LAIGINAAID SAKVNKILHY HGQSSGVKNK
301: NDWCSNTNDS AHSGWGSLVR SVPRSEITNH DWTDDRTKVQ QYGWENTADV SSQRQQRSLA KSTPSELSCN GWINELDVEE YNGWGVPEPR QGRRDASAEV
401: HYQGWENTSK DKIASSDVSS CKAMDKTDNA PEFRPIVYPG ENAETQEGNN PAFDFAVPSA PPVPKEIEDV HYPVIDLSPL PLSTPPVEQK TASVTTQKEK
501: EHKPALCIIC WEASVEGACV PCGHMVGCMQ CLNQIIKSKI GACPVCRVKI DQVIKLYSV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.