Factsheet for TraesCS1B01G107100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G088100.2	Wheat	cytosol	97.67	96.72
TraesCS1D01G089400.1	Wheat	cytosol	96.89	90.22
HORVU1Hr1G019320.3	Barley	cytosol	93.39	90.06
Os07t0446100-01	Rice	cytosol	76.85	77.0
EER98436	Sorghum	cytosol	72.37	72.09
Zm00001d019547_P002	Maize	cytosol	72.37	71.95
HORVU3Hr1G065130.2	Barley	cytosol	54.47	54.79
CDY68171	Canola	cytosol	9.34	53.93
KRG92416	Soybean	cytosol	46.11	51.86
KRH34390	Soybean	cytosol	45.91	51.75
CDY71158	Canola	nucleus	33.46	51.04
Bra014934.1-P	Field mustard	nucleus	44.36	50.89
PGSC0003DMT400044357	Potato	nucleus	49.22	50.5
AT3G23280.1	Thale cress	nucleus	44.75	49.78
Solyc09g090160.2.1	Tomato	nucleus	48.25	49.5
GSMUA_Achr5P14580_001	Banana	cytosol	49.61	49.32
VIT_05s0049g01160.t01	Wine grape	nucleus	47.86	49.2
Bra028419.1-P	Field mustard	nucleus	36.19	48.82
CDY49072	Canola	cytosol	35.99	48.43
VIT_12s0028g03750.t01	Wine grape	cytosol	46.69	48.29
CDX67415	Canola	cytosol	35.8	48.17
AT4G14365.1	Thale cress	cytosol	35.02	47.87
CDY08992	Canola	cytosol	40.66	47.39
CDX77533	Canola	cytosol	32.68	47.19
Bra014932.1-P	Field mustard	cytosol	32.68	47.19
CDX85079	Canola	cytosol	32.49	46.91
CDX85082	Canola	nucleus	44.55	44.73
CDY08997	Canola	cytosol	32.3	44.15
CDY03596	Canola	cytosol	27.82	43.87
Bra014247.1-P	Field mustard	nucleus	25.49	43.38
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	49.81	42.11
CDY62836	Canola	nucleus	32.88	40.92
PGSC0003DMT400028272	Potato	nucleus	42.8	39.08
Solyc06g008500.2.1	Tomato	cytosol	41.44	38.1
CDY35522	Canola	cytosol	35.6	32.62
Bra023739.1-P	Field mustard	vacuole	34.63	29.52

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1B01G107100	EnsemblPlants:TraesCS1B01G107100.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:119099306..119103772

Molecular Weight (calculated)

54839.5 Da

IEP (calculated)

7.093

GRAVY (calculated)

-0.273

Length

514 amino acids

Sequence
(BLAST)

001: MGVQQSKEEL LYQQVNYGNI EGIRNLRAQG AGVEWIDKEG KTPLMVASMR PDLLNVAKAL IELGANVNAY RPGSHAGTAL HHAAKKGLDP TVHLLLSHGA
101: NPFITNDDCN TALDLAREKG HVNVVRAIEG RISLFSGWMR ENYGPGFLEA FAPQFMTRKI WAVILPREAR NPTRPVKLEL AIYPELQAAK PRVVVKLWKS
201: QLEEPKYNLA DPSMTIFDKV TKSRYKLLPA YEGDKQQLRS FYSACCGMAQ VASMVPARPV NAPSPNPIPN PSLAPSAEST PSKEDLELAM AINASIQSAI
301: AEGVPNVQPM TSTNSSLNGW GSPDSPAPSK TSGQAQVDAP SSSKYNGWDV PGTSSNQSSS KPNKSQNNNP SIVITPEALP VPTPTALPVP TPTVLPTLPT
401: PTAPPLAEGT FYDGPIEYPS IDFTPVDVTM PPTEGGGTAL NSAKPVENGA DASSSGNTPS GTCVICLDAP VEGACIPCGH MAGCMSCLKD IESKKWGCPI
501: CRAKINQIIR LYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.