Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23280.1 | CDX97509 | AT3G13710.1 | 21798944 |
| AT3G23280.1 | CDY23634 | AT3G13710.1 | 21798944 |
| AT3G23280.1 | CDY37483 | AT3G13710.1 | 21798944 |
| AT3G23280.1 | CDY51735 | AT3G13710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014932.1-P | Field mustard | cytosol | 99.16 | 99.16 |
| CDX85079 | Canola | cytosol | 96.91 | 96.91 |
| CDY68171 | Canola | cytosol | 14.61 | 58.43 |
| CDY71158 | Canola | nucleus | 51.97 | 54.9 |
| CDY49072 | Canola | cytosol | 56.18 | 52.36 |
| CDX67415 | Canola | cytosol | 55.34 | 51.57 |
| CDY08992 | Canola | cytosol | 61.8 | 49.89 |
| AT3G23280.1 | Thale cress | nucleus | 62.08 | 47.84 |
| CDY03596 | Canola | cytosol | 43.54 | 47.55 |
| CDX85082 | Canola | nucleus | 66.29 | 46.09 |
| CDY08997 | Canola | cytosol | 47.47 | 44.95 |
| CDY62836 | Canola | nucleus | 50.0 | 43.1 |
| KRH34390 | Soybean | cytosol | 51.12 | 39.91 |
| KRG92416 | Soybean | cytosol | 50.84 | 39.61 |
| VIT_05s0049g01160.t01 | Wine grape | nucleus | 53.65 | 38.2 |
| Solyc09g090160.2.1 | Tomato | nucleus | 52.53 | 37.33 |
| PGSC0003DMT400044357 | Potato | nucleus | 51.4 | 36.53 |
| CDY35522 | Canola | cytosol | 53.93 | 34.22 |
| Os07t0446100-01 | Rice | cytosol | 48.03 | 33.33 |
| TraesCS1B01G107100.1 | Wheat | cytosol | 47.19 | 32.68 |
| TraesCS1A01G088100.2 | Wheat | cytosol | 47.19 | 32.37 |
| EER98436 | Sorghum | cytosol | 46.07 | 31.78 |
| Zm00001d019547_P002 | Maize | cytosol | 46.07 | 31.72 |
| HORVU1Hr1G019320.3 | Barley | cytosol | 47.47 | 31.71 |
| TraesCS1D01G089400.1 | Wheat | cytosol | 46.91 | 30.25 |
| HORVU3Hr1G065130.2 | Barley | cytosol | 41.85 | 29.16 |
| GSMUA_Achr5P14580_001 | Banana | cytosol | 39.61 | 27.27 |
| GSMUA_Achr4P18160_001 | Banana | golgi, mitochondrion, nucleus, plastid | 39.33 | 23.03 |
Protein Annotations
| Gene3D:1.25.40.20 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | GO:A0A078CR08 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDX77533 | ProteinID:CDX77533 | ProteinID:CDX77533.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00128425001 | InterPro:IPR001841 | InterPro:IPR002110 | InterPro:IPR013083 | InterPro:IPR020683 |
| InterPro:IPR036770 | PFAM:PF00023 | PFAM:PF13920 | PFscan:PS50088 | PFscan:PS50089 | PFscan:PS50297 |
| PANTHER:PTHR44837 | SMART:SM00248 | SUPFAM:SSF48403 | SUPFAM:SSF57850 | UniParc:UPI0004EE7292 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA07g06710D
Coordinates
chrLK031811:-:1546879..1549169
Molecular Weight (calculated)
39190.6 Da
IEP (calculated)
8.623
GRAVY (calculated)
-0.248
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQMQSKEKL MFNHVRSGNV EGIRALCLEG ANLEWMDKEG NTPLILACKK SKLYDVAQTL IELGANVNAH PPAPRDATPL YHAARRGLEK TVKLLLSNGA
101: NYDCQTPLQQ ARYYKYTKVV RAIENHICVF SGWMREFYGP ALLGVFAPQL LSRRVWVVII PTSSIYPKPY KFELVVYASL KDAQPRVVMA LRNPHLKEPE
201: EMHPNTSVTI VDNDNKKKSL KLASSIEEGR QQLKWFCDAC KGIPQPVRRP PVVVQTVLPS APPLADYDTE AIEEGPMHYP LSGSTTPSAS GGGGNKKDGG
301: SSGQCLICMD APSDGICVPC GHVAGCMSCL TQIKSHASEC PICRANIHQV MKVYRV
101: NYDCQTPLQQ ARYYKYTKVV RAIENHICVF SGWMREFYGP ALLGVFAPQL LSRRVWVVII PTSSIYPKPY KFELVVYASL KDAQPRVVMA LRNPHLKEPE
201: EMHPNTSVTI VDNDNKKKSL KLASSIEEGR QQLKWFCDAC KGIPQPVRRP PVVVQTVLPS APPLADYDTE AIEEGPMHYP LSGSTTPSAS GGGGNKKDGG
301: SSGQCLICMD APSDGICVPC GHVAGCMSCL TQIKSHASEC PICRANIHQV MKVYRV
001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV
Arabidopsis Description
XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.