Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027406.1-P | Field mustard | plasma membrane | 98.34 | 98.34 |
| CDY23634 | Canola | plasma membrane | 96.69 | 96.69 |
| CDY37483 | Canola | plasma membrane | 80.66 | 80.22 |
| CDY51735 | Canola | plasma membrane | 78.45 | 78.02 |
| AT3G13710.1 | Thale cress | plasma membrane | 69.61 | 67.02 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 62.43 | 60.43 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 61.33 | 59.36 |
| CDY08228 | Canola | plasma membrane | 60.77 | 58.2 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 58.01 | 57.69 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 59.67 | 57.14 |
| Solyc03g121460.1.1 | Tomato | plastid | 56.91 | 56.59 |
| KRH23330 | Soybean | plastid | 56.35 | 55.43 |
| KRH10001 | Soybean | mitochondrion | 55.8 | 54.89 |
| KRH44167 | Soybean | plasma membrane | 49.17 | 50.57 |
| KRH47141 | Soybean | plasma membrane | 49.17 | 50.0 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 52.49 | 49.22 |
| EES00126 | Sorghum | plastid | 51.93 | 48.96 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 51.93 | 48.7 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 49.72 | 47.87 |
| TraesCS3B01G122600.1 | Wheat | plastid | 49.17 | 46.84 |
| TraesCS3D01G106500.1 | Wheat | plastid | 49.17 | 46.84 |
| TraesCS3A01G104300.1 | Wheat | plastid | 48.07 | 45.55 |
| CDX81845 | Canola | plasma membrane | 44.75 | 44.75 |
| CDY26225 | Canola | plasma membrane | 45.3 | 44.57 |
| Os05t0200280-01 | Rice | plasma membrane | 47.51 | 44.56 |
| Os01t0196500-01 | Rice | plastid | 48.62 | 43.78 |
| TraesCS1B01G143000.1 | Wheat | plastid | 46.41 | 43.75 |
| CDY55133 | Canola | plasma membrane | 51.38 | 43.66 |
| TraesCS1A01G124100.1 | Wheat | plastid | 45.86 | 43.46 |
| TraesCS1D01G130300.1 | Wheat | plastid | 45.86 | 43.46 |
| CDY59501 | Canola | plasma membrane | 43.65 | 42.93 |
| CDY37482 | Canola | plastid | 48.07 | 41.63 |
| CDY51733 | Canola | plastid | 48.62 | 41.12 |
| CDY51734 | Canola | plastid | 46.96 | 40.67 |
| HORVU1Hr1G028520.1 | Barley | plastid | 45.86 | 38.43 |
| Zm00001d037747_P001 | Maize | plastid | 39.23 | 37.77 |
| OQU77594 | Sorghum | plastid | 40.33 | 37.24 |
| CDY05662 | Canola | plastid | 14.92 | 36.99 |
| CDY41253 | Canola | plastid | 17.13 | 36.05 |
| HORVU3Hr1G018940.2 | Barley | plastid | 49.17 | 34.9 |
| CDY25186 | Canola | plastid | 16.57 | 34.88 |
| CDY27245 | Canola | plastid | 38.12 | 33.99 |
| CDX72173 | Canola | plastid | 38.12 | 33.99 |
| CDX93539 | Canola | plastid | 38.67 | 33.65 |
| CDY43514 | Canola | mitochondrion | 32.04 | 33.14 |
| CDY06788 | Canola | plastid | 35.36 | 32.99 |
| CDY31997 | Canola | plastid | 38.12 | 32.86 |
| CDX95035 | Canola | plastid | 37.57 | 32.69 |
| CDX67633 | Canola | plastid | 37.57 | 32.23 |
| CDY18870 | Canola | plastid | 37.02 | 32.06 |
| CDX74794 | Canola | plastid | 37.02 | 31.46 |
| CDX70153 | Canola | plastid | 37.02 | 31.16 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 30.94 | 30.27 |
| CDX86646 | Canola | plasma membrane | 29.28 | 29.78 |
| CDY61529 | Canola | plastid | 20.44 | 29.37 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 29.83 | 29.03 |
| CDX80758 | Canola | plastid | 34.25 | 28.97 |
| CDY15494 | Canola | plasma membrane | 28.18 | 28.65 |
| CDY07736 | Canola | plastid | 33.7 | 27.48 |
| CDY32804 | Canola | plastid | 28.18 | 27.13 |
| CDY63156 | Canola | plastid | 32.6 | 27.06 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 25.97 | 25.82 |
| CDY58876 | Canola | plastid | 30.39 | 25.23 |
| CDY17405 | Canola | plastid | 26.52 | 25.0 |
| CDX81033 | Canola | plastid | 29.83 | 24.77 |
Protein Annotations
| EnsemblPlants:CDX97509 | EnsemblPlantsGene:GSBRNA2T00104716001 | GO:A0A078E9V0 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 |
| PFAM:PF03208 | ProteinID:CDX97509 | ProteinID:CDX97509.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF4604 |
| MapMan:22.8.4.3.2 | : | : | : | : | : |
Description
BnaA05g25700D
Coordinates
chrLK031900:-:46683..47521
Molecular Weight (calculated)
20242.2 Da
IEP (calculated)
9.424
GRAVY (calculated)
0.691
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIPTS SHGSPVVDLD SVSRVKQQIK DGLATRRPWR VMFDFHSVGI PRGLSDAFSR IKKNLVYFQT NYAIVFLVVI FLSLIKHPTS LIVLTVLVFV
101: WIFLYFLRDE PIKLFSYQVD DKTVLVCLSV ITIVLLFLTN ATLNIAGALL IGAVLVLIHA VVRKTDDLFL DEKAAMAETL A
101: WIFLYFLRDE PIKLFSYQVD DKTVLVCLSV ITIVLLFLTN ATLNIAGALL IGAVLVLIHA VVRKTDDLFL DEKAAMAETL A
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.