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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX79447
CDX81033
CDX84035
CDX84751
CDX89402
CDX89404
CDX94426
CDX94429
CDX96860
CDY49093
CDY49480
CDY58876
CDY62016
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G53180.1 CDX84035 AT1G14340.1 21798944
AT3G53180.1 CDX96860 AT1G14340.1 21798944
AT3G53180.1 CDY49093 AT1G14340.1 21798944
AT3G53180.1 CDY62016 AT1G14340.1 21798944
AT3G53180.1 CDX79447 AT2G31955.1 21798944
AT3G53180.1 CDX84751 AT2G31955.1 21798944
AT3G53180.1 CDX89402 AT4G25660.1 21798944
AT3G53180.1 CDX89404 AT4G25660.1 21798944
AT3G53180.1 CDX94426 AT4G25660.1 21798944
AT3G53180.1 CDX94429 AT4G25660.1 21798944
AT3G53180.1 CDY49480 AT4G25660.1 21798944
AT3G53180.1 CDY66007 AT4G25660.1 21798944
AT3G53180.1 CDX81033 AT5G07110.1 21798944
AT3G53180.1 CDY58876 AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78151 Canola cytosol 96.34 93.27
CDY13313 Canola cytosol 88.05 88.26
CDX67559 Canola cytosol 87.44 86.18
AT3G53180.1 Thale cress cytosol 87.2 83.92
VIT_08s0007g04670.t01 Wine grape cytosol 68.54 66.9
PGSC0003DMT400072665 Potato cytosol 28.78 66.86
Solyc10g083830.1.1 Tomato extracellular 49.27 65.91
KRH32570 Soybean cytosol, nucleus 66.22 64.95
Zm00001d031055_P001 Maize cytosol 12.68 64.6
GSMUA_AchrUn_... Banana cytosol 39.39 62.48
Solyc01g056400.1.1 Tomato endoplasmic reticulum, extracellular 5.0 62.12
Zm00001d047936_P001 Maize cytosol 13.54 62.01
Zm00001d044569_P001 Maize cytosol 13.54 62.01
Zm00001d033947_P001 Maize cytosol 8.29 60.71
TraesCS1A01G143000.1 Wheat cytosol 61.22 59.69
TraesCS1D01G141800.1 Wheat golgi 61.22 59.62
HORVU1Hr1G038060.9 Barley cytosol 61.34 59.6
TraesCS1B01G158600.1 Wheat cytosol 61.1 59.5
GSMUA_AchrUn_... Banana cytosol 23.17 59.38
EER91525 Sorghum cytosol 60.49 58.91
Zm00001d032815_P011 Maize cytosol 60.24 58.67
Os10t0456500-02 Rice plasma membrane 59.76 57.99
PGSC0003DMT400024814 Potato cytosol 20.85 56.81
TraesCS6D01G065600.1 Wheat cytosol 55.49 55.83
Solyc10g083550.1.1 Tomato cytosol 26.59 54.64
HORVU6Hr1G012290.5 Barley cytosol 54.88 53.38
PGSC0003DMT400048935 Potato cytosol 17.2 52.42
Solyc10g083840.1.1 Tomato cytosol 10.12 51.55
Solyc06g011330.1.1 Tomato cytosol 18.41 50.67
PGSC0003DMT400072666 Potato cytosol 52.32 50.65
Solyc10g083850.1.1 Tomato cytosol 51.22 50.42
Solyc01g056430.1.1 Tomato cytosol 20.24 50.3
KRH32567 Soybean endoplasmic reticulum 26.34 50.12
Solyc01g056390.1.1 Tomato cytosol, nucleus 6.59 49.54
PGSC0003DMT400072398 Potato cytosol 28.17 49.25
Zm00001d021367_P001 Maize cytosol 11.95 47.34
KRH75546 Soybean plastid 13.17 46.96
Solyc06g011290.1.1 Tomato cytosol 20.37 42.82
PGSC0003DMT400024816 Potato cytosol 16.34 41.88
PGSC0003DMT400048929 Potato cytosol, plastid 8.66 41.28
Solyc01g056450.1.1 Tomato cytosol 11.95 40.16
PGSC0003DMT400048927 Potato cytosol 6.95 37.25
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2Gene3D:3.10.20.70Gene3D:3.20.20.140
Gene3D:3.30.590.10MapMan:35.2GO:A0A078C9Y6InterPro:Amidohydro-relEnsemblPlants:CDX73575ProteinID:CDX73575
ProteinID:CDX73575.1GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0006542GO:GO:0006807
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00109126001
InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_cat_domInterPro:IPR036651InterPro:Metal_Hydrolase
PFAM:PF00120PFAM:PF04909PFAM:PF16952PANTHER:PTHR43785PANTHER:PTHR43785:SF2MetaCyc:PWY-381
MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230SUPFAM:SSF51556
SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0004EE5DD6SEG:seg::
Description
BnaC08g24280D
Coordinates
chrLK031799:-:1374955..1379418
Molecular Weight (calculated)
90837.6 Da
IEP (calculated)
6.113
GRAVY (calculated)
-0.166
Length
820 amino acids
Sequence
(BLAST)
001: MEMEFKELKE AIDQVELVDA HAHNIVSLDS SFPFIGTFSE ATGDALSFAP HSLSFKRNLK EIAQLYGPEV SLEAIEKHRQ ASGLHSFTSK CFKEAGISAL
101: LIDDGLKLDK KHDIEWHRDF VPFVGRVLRV ETLAEQILDE EIKIVALKTV AAYRSGLDID THVTKEAAEN GLVEVLQAGK PVRIGNKSLI DYILTLTLEV
201: AERHDLPLQI HTGFGDRDLD LRLANPLHLR TLLEDKRFAK LRIVLLHASY PFSKEASYLS SVYPQVYLDF GLAVPKLSVH GMVSSVKELL DLAPTKKVMF
301: STDGYASPET YYLGAKKARE VIYLVLRDAC ASGDLSLMEA IDAAKDIFSR NSIAFYKLNL DVNSFSPQRR ISLAPQMKEP DVQEDSSSFV RIIWVDTSGQ
401: QRCRAVQANR FNRSVKKNGI GLTHASMGMP SFTDGPAEES KLTGVGEIRL VPDLSTKRTI PWTKQESMVL GDMLLKPGEA WEYCPRETLR RAAKVLKDEF
501: DLVMNAGFEN EFYLLKNVVR EGKEEYVPFD FGPYCSTSSY DAASPLFHEI VPALESLNIT VEQFHAESGK GQFEVSLGHT VASHAADNLV YTREVIRSVA
601: RKHGFLATFV PKYDLCDIGS GSHVHLSLSK NGENVFPASD KSSAHGLSSI GEEFMAGVLF HLPSILAVIA PLPNSYDRIQ PNTWSGAFQC WGKENREAAI
701: RTASPPGAPE GLITNFEIKS CDGAANPHLS LAIIMAAGID GLRRHLQLPE PIDTNPADVA ATLKRLPESL SEAVEALEKD QVLHELLGQK LLVAITGVRK
801: SEVEYYSKNP DACKQLIHRY
Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)
001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
Arabidopsis Description
Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.