Factsheet for VIT_08s0007g04670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_13s0156g00170.t01
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT3G53180.1	VIT_13s0156g00170.t01	AT2G31955.1	21798944
AT3G53180.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072665	Potato	cytosol	31.31	74.5
Solyc10g083830.1.1	Tomato	extracellular	53.93	73.9
KRH32570	Soybean	cytosol, nucleus	71.19	71.53
Zm00001d031055_P001	Maize	cytosol	13.33	69.57
AT3G53180.1	Thale cress	cytosol	70.48	69.48
Zm00001d047936_P001	Maize	cytosol	14.64	68.72
Zm00001d044569_P001	Maize	cytosol	14.64	68.72
CDX73575	Canola	cytosol	66.9	68.54
Bra028548.1-P	Field mustard	cytosol	66.19	68.05
CDX67559	Canola	cytosol	67.38	68.03
CDY13313	Canola	cytosol	66.19	67.97
Bra006975.1-P	Field mustard	cytosol	68.45	67.89
CDX78151	Canola	cytosol	68.45	67.89
GSMUA_AchrUn_...	Banana	cytosol	40.36	65.57
GSMUA_AchrUn_...	Banana	cytosol	24.64	64.69
Zm00001d032815_P011	Maize	cytosol	64.52	64.37
Zm00001d033947_P001	Maize	cytosol	8.57	64.29
EER91525	Sorghum	cytosol	64.05	63.9
Os10t0456500-02	Rice	plasma membrane	64.17	63.79
TraesCS1B01G158600.1	Wheat	cytosol	63.93	63.78
TraesCS1A01G143000.1	Wheat	cytosol	63.57	63.5
TraesCS1D01G141800.1	Wheat	golgi	63.45	63.3
HORVU1Hr1G038060.9	Barley	cytosol	63.33	63.03
PGSC0003DMT400024814	Potato	cytosol	21.43	59.8
KRH32567	Soybean	endoplasmic reticulum	30.12	58.7
Solyc10g083550.1.1	Tomato	cytosol	27.74	58.4
TraesCS6D01G065600.1	Wheat	cytosol	56.43	58.16
HORVU6Hr1G012290.5	Barley	cytosol	58.21	58.01
PGSC0003DMT400072666	Potato	cytosol	57.02	56.55
KRH75546	Soybean	plastid	15.36	56.09
Solyc10g083840.1.1	Tomato	cytosol	10.6	55.28
Solyc06g011330.1.1	Tomato	cytosol	19.4	54.7
PGSC0003DMT400048935	Potato	cytosol	17.5	54.65
Solyc10g083850.1.1	Tomato	cytosol	54.05	54.5
PGSC0003DMT400072398	Potato	cytosol	30.24	54.16
Solyc01g056430.1.1	Tomato	cytosol	20.71	52.73
Zm00001d021367_P001	Maize	cytosol	12.98	52.66
PGSC0003DMT400024816	Potato	cytosol	17.5	45.94
Solyc01g056450.1.1	Tomato	cytosol	13.33	45.9
Solyc06g011290.1.1	Tomato	cytosol	20.6	44.36
PGSC0003DMT400048929	Potato	cytosol, plastid	8.57	41.86
PGSC0003DMT400048927	Potato	cytosol	6.43	35.29

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	EntrezGene:100265821	wikigene:100265821
Gene3D:3.10.20.70	Gene3D:3.20.20.140	Gene3D:3.30.590.10	MapMan:35.2	EMBL:AM427950	InterPro:Amidohydro-rel
ProteinID:CAN73462	ProteinID:CAN73462.1	ProteinID:CBI30174	ProteinID:CBI30174.3	UniProt:D7TIU8	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synt_b-grasp
InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	EntrezGene:LOC100265821	wikigene:LOC100265821	InterPro:Metal_Hydrolase
PFAM:PF00120	PFAM:PF04909	PFAM:PF16952	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230
SUPFAM:SSF51556	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0001BE378D	ArrayExpress:VIT_08s0007g04670	EnsemblPlantsGene:VIT_08s0007g04670
EnsemblPlants:VIT_08s0007g04670.t01	unigene:Vvi.5590	RefSeq:XP_002266164	RefSeq:XP_002266164.1	:	:

Description

No Description!

Coordinates

chr8:+:18605830..18623669

Molecular Weight (calculated)

93312.0 Da

IEP (calculated)

6.217

GRAVY (calculated)

-0.072

Length

840 amino acids

Sequence
(BLAST)

001: MEKYAELREA VEKVELVDAH AHNIVALDSA FPFIGCFSEA NGDALSYATH SLCFKRSLRE IAELYGSEVS LSGVEEYRRC SGLQSITSTC FKAARITAIL
101: IDDGIDFDKK HDIQWHRNFT PIVGRILRIE HLAEKILDEE APDGSPWTLD VFTAIFVGKL KSYPLHISYI AAYRSGLEIN TNVSRQDAEE GLAEVLYAGK
201: PVRITNKNFI DYIFTRSLEV ALCFDLPMQL HTGFGDRDLD LRLANPLHLR TLLEDKRFSK CRIVLLHASY PFSKEASYLA SVYPQVYLDF GLAIPKLSTH
301: GMISSVKELL ELAPIKKVMF STDGYAFPET FYLGAKKARE VVFTVLRDAC IDGDLSIPEA VEAAEDIFAK NAIQFYKLNV AMKSIDLKNA ICPKLMSIGN
401: NSSQNDITLV RIIWVDASGQ QRCRVVPARR FYDVVLKNGV GLTFACMGMS SAIDGPADGT NLSGVGETRL VPDLSTKCRI PWAKQEEMVL ADMHLKPGKP
501: WEYCPREALR RISKVLKDEF NLVVNAGFEV EFYLLKRILR EGKEEWVPFD STPYCSTSAF DAASPIFHEV LAALQSLNVP VEQLHAEAGK GQFEIALGHT
601: VCSCSADNLI FTHEVIKACA RRHGLLATFV PKYTLDDIGS GSHVHISLWE NGENVFMASG QGSHYGISKV GEEFMAGVLH HLPSILAFTA PVPNSYDRIQ
701: PDTWSGAYQC WGQENREAPL RTACPPGVPD GLVSNFEIKS FDGCANPHLG LASIIASGID GLRKHLQLPV PVDENPSDLS AELRRLPKSL SESLEALGKD
801: NVMKDLIGEK LLVAIKGIRK AEINYYSQNV DAYKQLIHRY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.